Results 21 - 40 of 74 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 69305 | 0.7 | 0.617899 |
Target: 5'- cGCCGGGGAcGGUCAGC----CCUCCCg -3' miRNA: 3'- cUGGCCUUU-CCGGUCGagcaGGAGGG- -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 36323 | 0.69 | 0.648053 |
Target: 5'- gGGCCGGGgccGGGGCUcGCUgGUCCgCCg -3' miRNA: 3'- -CUGGCCU---UUCCGGuCGAgCAGGaGGg -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 151610 | 0.69 | 0.648053 |
Target: 5'- cGGCCGGGGgccGGGCCgggGGCguggccgCGUCCaucaggCCCg -3' miRNA: 3'- -CUGGCCUU---UCCGG---UCGa------GCAGGa-----GGG- -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 96992 | 0.69 | 0.668107 |
Target: 5'- cGGCgGGGccAGGGCCGGCcCG-CCgCCCg -3' miRNA: 3'- -CUGgCCU--UUCCGGUCGaGCaGGaGGG- -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 90398 | 0.69 | 0.678096 |
Target: 5'- gGGCgCGGuuGGGCCGGCgCGU--UCCCg -3' miRNA: 3'- -CUG-GCCuuUCCGGUCGaGCAggAGGG- -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 139058 | 0.69 | 0.678096 |
Target: 5'- cGGCUGGAGgccgcGGGCCaccacguggcGGCgccaGUCCUCCUc -3' miRNA: 3'- -CUGGCCUU-----UCCGG----------UCGag--CAGGAGGG- -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 15099 | 0.69 | 0.688049 |
Target: 5'- -uUCGGAaggcGAGGCCGGUggcgcugucgUCGUCCUCg- -3' miRNA: 3'- cuGGCCU----UUCCGGUCG----------AGCAGGAGgg -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 31907 | 0.69 | 0.688049 |
Target: 5'- -gUCGGAcucGGGCCccgcGGcCUCGUCCUCgCCu -3' miRNA: 3'- cuGGCCUu--UCCGG----UC-GAGCAGGAG-GG- -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 41391 | 0.69 | 0.697957 |
Target: 5'- uGGCCGGGAGGGacaCGGCcCGaCCUUCg -3' miRNA: 3'- -CUGGCCUUUCCg--GUCGaGCaGGAGGg -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 28708 | 0.69 | 0.697957 |
Target: 5'- uGCCuGGAgcccGAGGCCcgAGCUCGggcCCgagCCCg -3' miRNA: 3'- cUGG-CCU----UUCCGG--UCGAGCa--GGa--GGG- -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 102494 | 0.68 | 0.707812 |
Target: 5'- aGugCGGGGacGGGCCGGCgccggggUGUCCguaggccaccgUCCCc -3' miRNA: 3'- -CugGCCUU--UCCGGUCGa------GCAGG-----------AGGG- -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 122834 | 0.68 | 0.727327 |
Target: 5'- -gUCGGggGcGGCggcggCGGCUCGUcCCUCUCa -3' miRNA: 3'- cuGGCCuuU-CCG-----GUCGAGCA-GGAGGG- -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 88750 | 0.68 | 0.727327 |
Target: 5'- gGACCGGggGcgcgcauGCCGGC-CG-CCUCCg -3' miRNA: 3'- -CUGGCCuuUc------CGGUCGaGCaGGAGGg -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 4097 | 0.68 | 0.736009 |
Target: 5'- gGGCCGGGGcgggcucggcccuGGGCgGGCUCGgccggggcgCCgccCCCg -3' miRNA: 3'- -CUGGCCUU-------------UCCGgUCGAGCa--------GGa--GGG- -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 132146 | 0.68 | 0.73697 |
Target: 5'- cGCCGG--GGGCCGGCgggCGgggcgCCcCCCc -3' miRNA: 3'- cUGGCCuuUCCGGUCGa--GCa----GGaGGG- -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 67563 | 0.68 | 0.746525 |
Target: 5'- cGCCaGGggGGGCgAcCUCGggCUCCCg -3' miRNA: 3'- cUGG-CCuuUCCGgUcGAGCagGAGGG- -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 144440 | 0.68 | 0.746525 |
Target: 5'- cGGCCGcuaGAcGGGUCGGCU-GUCCugcUCCCg -3' miRNA: 3'- -CUGGC---CUuUCCGGUCGAgCAGG---AGGG- -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 68820 | 0.68 | 0.746525 |
Target: 5'- aGACggCGGugacgcuaGCCAGCUCGUCCUgugugaCCCa -3' miRNA: 3'- -CUG--GCCuuuc----CGGUCGAGCAGGA------GGG- -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 55981 | 0.67 | 0.755983 |
Target: 5'- cGCCGGGGAGGCCgcgggggcgaggGGCUgGUaggcgggUCCCg -3' miRNA: 3'- cUGGCCUUUCCGG------------UCGAgCAgg-----AGGG- -5' |
|||||||
5197 | 5' | -58.1 | NC_001798.1 | + | 84346 | 0.67 | 0.755983 |
Target: 5'- cGAUCGGGAAGGCC---UCGUCggaCCCa -3' miRNA: 3'- -CUGGCCUUUCCGGucgAGCAGga-GGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home