miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5197 5' -58.1 NC_001798.1 + 152094 0.67 0.78369
Target:  5'- gGGCCGG--GGGUCGGCcccgucaagCGUCCccgCCCc -3'
miRNA:   3'- -CUGGCCuuUCCGGUCGa--------GCAGGa--GGG- -5'
5197 5' -58.1 NC_001798.1 + 151610 0.69 0.648053
Target:  5'- cGGCCGGGGgccGGGCCgggGGCguggccgCGUCCaucaggCCCg -3'
miRNA:   3'- -CUGGCCUU---UCCGG---UCGa------GCAGGa-----GGG- -5'
5197 5' -58.1 NC_001798.1 + 149755 0.71 0.577869
Target:  5'- gGGCCGaGGGAGGUUu-CUCGUCuCUCCCc -3'
miRNA:   3'- -CUGGC-CUUUCCGGucGAGCAG-GAGGG- -5'
5197 5' -58.1 NC_001798.1 + 149665 0.72 0.519054
Target:  5'- cGCCGGGucgcGGGCCccgGGCUCGgggCCgCCCu -3'
miRNA:   3'- cUGGCCUu---UCCGG---UCGAGCa--GGaGGG- -5'
5197 5' -58.1 NC_001798.1 + 147056 0.71 0.538432
Target:  5'- cGGCCGGAGGGGCCcccgcacCUCGgcggCCgCCCc -3'
miRNA:   3'- -CUGGCCUUUCCGGuc-----GAGCa---GGaGGG- -5'
5197 5' -58.1 NC_001798.1 + 144440 0.68 0.746525
Target:  5'- cGGCCGcuaGAcGGGUCGGCU-GUCCugcUCCCg -3'
miRNA:   3'- -CUGGC---CUuUCCGGUCGAgCAGG---AGGG- -5'
5197 5' -58.1 NC_001798.1 + 141599 0.66 0.843366
Target:  5'- cGGCCGGcguGGCCgAGUUCuuggaggaGUCCcCCCu -3'
miRNA:   3'- -CUGGCCuuuCCGG-UCGAG--------CAGGaGGG- -5'
5197 5' -58.1 NC_001798.1 + 139370 0.67 0.801518
Target:  5'- cGGCgGGGAGGGCUcGCgggaCGUCCgggCaCCa -3'
miRNA:   3'- -CUGgCCUUUCCGGuCGa---GCAGGa--G-GG- -5'
5197 5' -58.1 NC_001798.1 + 139058 0.69 0.678096
Target:  5'- cGGCUGGAGgccgcGGGCCaccacguggcGGCgccaGUCCUCCUc -3'
miRNA:   3'- -CUGGCCUU-----UCCGG----------UCGag--CAGGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 135050 0.72 0.509469
Target:  5'- -cUCGGAGGcGGCCGGC-CG-CCUCCUg -3'
miRNA:   3'- cuGGCCUUU-CCGGUCGaGCaGGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 132146 0.68 0.73697
Target:  5'- cGCCGG--GGGCCGGCgggCGgggcgCCcCCCc -3'
miRNA:   3'- cUGGCCuuUCCGGUCGa--GCa----GGaGGG- -5'
5197 5' -58.1 NC_001798.1 + 129356 0.71 0.525807
Target:  5'- cGCCGGGccuggcGGGGCCcccggacccgccaaGGCaUCGaUCCUCCCg -3'
miRNA:   3'- cUGGCCU------UUCCGG--------------UCG-AGC-AGGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 128969 0.66 0.835338
Target:  5'- -cCCGGAgGAGGC--GCUCGUCa-CCCa -3'
miRNA:   3'- cuGGCCU-UUCCGguCGAGCAGgaGGG- -5'
5197 5' -58.1 NC_001798.1 + 127947 0.67 0.78369
Target:  5'- -cCCGGGcgaaAAGGcCCGGCccgCGUCCccggCCCu -3'
miRNA:   3'- cuGGCCU----UUCC-GGUCGa--GCAGGa---GGG- -5'
5197 5' -58.1 NC_001798.1 + 124330 0.66 0.851208
Target:  5'- gGGCCGGGAcGGCgCGGaaagCGUCauccgCCCg -3'
miRNA:   3'- -CUGGCCUUuCCG-GUCga--GCAGga---GGG- -5'
5197 5' -58.1 NC_001798.1 + 122834 0.68 0.727327
Target:  5'- -gUCGGggGcGGCggcggCGGCUCGUcCCUCUCa -3'
miRNA:   3'- cuGGCCuuU-CCG-----GUCGAGCA-GGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 122129 0.72 0.503753
Target:  5'- aGCCGGggGGGCCcccgggccgcgggcgAGgaCGUCCUCa- -3'
miRNA:   3'- cUGGCCuuUCCGG---------------UCgaGCAGGAGgg -5'
5197 5' -58.1 NC_001798.1 + 117520 0.72 0.509469
Target:  5'- aACCGGcuGGGGCCGGCccaGccCCUCCCg -3'
miRNA:   3'- cUGGCCu-UUCCGGUCGag-Ca-GGAGGG- -5'
5197 5' -58.1 NC_001798.1 + 113344 0.66 0.819601
Target:  5'- gGACCGGAcgggcgguGGcGCCGGCauguauuauagccgcCGUCCUCgCCu -3'
miRNA:   3'- -CUGGCCUu-------UC-CGGUCGa--------------GCAGGAG-GG- -5'
5197 5' -58.1 NC_001798.1 + 111589 0.67 0.765336
Target:  5'- uGAgCGGggGGcCCGGCggggCGgCCUCCUg -3'
miRNA:   3'- -CUgGCCuuUCcGGUCGa---GCaGGAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.