Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5198 | 3' | -60.4 | NC_001798.1 | + | 149435 | 0.68 | 0.601113 |
Target: 5'- -uUGCGCgCGUGCUCGggGAGCaGGGu -3' miRNA: 3'- guACGCGgGCAUGGGCagCUCG-CCCu -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 149988 | 0.69 | 0.562039 |
Target: 5'- --gGCGCCCGcggACgCCGgggCGAGCGGc- -3' miRNA: 3'- guaCGCGGGCa--UG-GGCa--GCUCGCCcu -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 150562 | 0.66 | 0.750626 |
Target: 5'- --aGCgGCCCGggGCCCG-CGgggcggcgcggagacGGCGGGGg -3' miRNA: 3'- guaCG-CGGGCa-UGGGCaGC---------------UCGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 152873 | 0.66 | 0.765351 |
Target: 5'- --gGCgGCCCGUuaaaagcugcuAauuaCCG-CGAGCGGGAa -3' miRNA: 3'- guaCG-CGGGCA-----------Ug---GGCaGCUCGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 154108 | 0.66 | 0.756179 |
Target: 5'- gCcgGCGCCgGggacCCCGgCG-GCGGGGa -3' miRNA: 3'- -GuaCGCGGgCau--GGGCaGCuCGCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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