miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5198 3' -60.4 NC_001798.1 + 49767 0.7 0.494665
Target:  5'- cCGUGCGgggaguuCCCGUggagGCCCGgCGAcuGCGGGAg -3'
miRNA:   3'- -GUACGC-------GGGCA----UGGGCaGCU--CGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 52779 0.76 0.246143
Target:  5'- --gGCGcCCCGggcGCCCGU-GAGCGGGAc -3'
miRNA:   3'- guaCGC-GGGCa--UGGGCAgCUCGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 53606 0.66 0.737537
Target:  5'- gGUGCGCgC---CCCGUUcaaGAGCGGGGc -3'
miRNA:   3'- gUACGCGgGcauGGGCAG---CUCGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 65792 0.69 0.581509
Target:  5'- gCAUGCacaGCCCGaUGCCCccguugCGGGCGaGGAu -3'
miRNA:   3'- -GUACG---CGGGC-AUGGGca----GCUCGC-CCU- -5'
5198 3' -60.4 NC_001798.1 + 75976 0.7 0.504883
Target:  5'- cCGUGaUGCCCGUGCCCGcCGcccCGGGc -3'
miRNA:   3'- -GUAC-GCGGGCAUGGGCaGCuc-GCCCu -5'
5198 3' -60.4 NC_001798.1 + 81255 0.66 0.756179
Target:  5'- --cGcCGCCCGcgACCCG-CGGgaccuuGCGGGGg -3'
miRNA:   3'- guaC-GCGGGCa-UGGGCaGCU------CGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 85242 0.67 0.67004
Target:  5'- --cGCGCCCGccccCCCG-CGGccgcGCGGGGc -3'
miRNA:   3'- guaCGCGGGCau--GGGCaGCU----CGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 89910 1.07 0.001687
Target:  5'- uCAUGCGCCCGUACCCGUCGAGCGGGAc -3'
miRNA:   3'- -GUACGCGGGCAUGGGCAGCUCGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 93099 0.66 0.746905
Target:  5'- --cGCGCgacgCCGggaacaaggGCCCGgCGGGCGGGu -3'
miRNA:   3'- guaCGCG----GGCa--------UGGGCaGCUCGCCCu -5'
5198 3' -60.4 NC_001798.1 + 98512 0.66 0.765351
Target:  5'- --cGCGCCCccguagGCCCGccaugcgCGGGgGGGGc -3'
miRNA:   3'- guaCGCGGGca----UGGGCa------GCUCgCCCU- -5'
5198 3' -60.4 NC_001798.1 + 98856 0.68 0.630662
Target:  5'- aCGUGUGCCCGccCCCGaCGGGCGc-- -3'
miRNA:   3'- -GUACGCGGGCauGGGCaGCUCGCccu -5'
5198 3' -60.4 NC_001798.1 + 102444 0.68 0.61095
Target:  5'- --gGgGCCCGcgaacagcaUACCCGgguacgggUGGGCGGGAg -3'
miRNA:   3'- guaCgCGGGC---------AUGGGCa-------GCUCGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 104978 0.71 0.468198
Target:  5'- aCAUGCGCCCGU-CUCGaaagUCGGcgcuGCGGGu -3'
miRNA:   3'- -GUACGCGGGCAuGGGC----AGCU----CGCCCu -5'
5198 3' -60.4 NC_001798.1 + 106667 0.71 0.476336
Target:  5'- --cGCGCCUGcguucggucaggcUGCUCGUgCGAGCGGGc -3'
miRNA:   3'- guaCGCGGGC-------------AUGGGCA-GCUCGCCCu -5'
5198 3' -60.4 NC_001798.1 + 108885 0.66 0.746905
Target:  5'- --cGCGCUCGUGCgCGcgCGAuaCGGGAa -3'
miRNA:   3'- guaCGCGGGCAUGgGCa-GCUc-GCCCU- -5'
5198 3' -60.4 NC_001798.1 + 111807 0.66 0.762611
Target:  5'- cCGUGCGCCgGUcGCgggCGUCcaggggcuggcgcgGGGCGGGAa -3'
miRNA:   3'- -GUACGCGGgCA-UGg--GCAG--------------CUCGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 113789 0.7 0.502087
Target:  5'- --cGCcCCCGUGCCUGUUGGGCacagugggugcucgGGGAc -3'
miRNA:   3'- guaCGcGGGCAUGGGCAGCUCG--------------CCCU- -5'
5198 3' -60.4 NC_001798.1 + 132140 0.68 0.601113
Target:  5'- -cUGCGCCgcCGgggGCCgG-CGGGCGGGGc -3'
miRNA:   3'- guACGCGG--GCa--UGGgCaGCUCGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 135987 0.67 0.660219
Target:  5'- uCGUGCGCguaUGU-CCCGg-GGGCGGGGa -3'
miRNA:   3'- -GUACGCGg--GCAuGGGCagCUCGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 148015 0.71 0.432932
Target:  5'- --gGCGCCCGUccccuuccucuACCgCGUgggcgCGGGCGGGGg -3'
miRNA:   3'- guaCGCGGGCA-----------UGG-GCA-----GCUCGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.