miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5198 3' -60.4 NC_001798.1 + 1807 0.69 0.55237
Target:  5'- gCGUGCuGCCgCGagaccacggGCCCGUCG-GCGGGc -3'
miRNA:   3'- -GUACG-CGG-GCa--------UGGGCAGCuCGCCCu -5'
5198 3' -60.4 NC_001798.1 + 4822 0.68 0.650378
Target:  5'- cCGUGCcaCCCGaACCCGggccgCGcGGCGGGGc -3'
miRNA:   3'- -GUACGc-GGGCaUGGGCa----GC-UCGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 7966 0.67 0.699298
Target:  5'- gCAUGCGCCUucugGUGCUuuuggcgcacgCGUCGAcguguuccuacGCGGGGu -3'
miRNA:   3'- -GUACGCGGG----CAUGG-----------GCAGCU-----------CGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 15394 0.66 0.756179
Target:  5'- --gGCGCCCaccggACCCGggguugCGGGUccGGGAg -3'
miRNA:   3'- guaCGCGGGca---UGGGCa-----GCUCG--CCCU- -5'
5198 3' -60.4 NC_001798.1 + 15546 0.73 0.343791
Target:  5'- uCGUGUGCCCGgcCCCGggCGuugccgccgccgcGGCGGGGa -3'
miRNA:   3'- -GUACGCGGGCauGGGCa-GC-------------UCGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 16166 0.66 0.728085
Target:  5'- --aGCGCCaCGggcgGCCCG-CGGGgacCGGGGg -3'
miRNA:   3'- guaCGCGG-GCa---UGGGCaGCUC---GCCCU- -5'
5198 3' -60.4 NC_001798.1 + 20897 0.68 0.650378
Target:  5'- -cUGCGCuuCCGUgaACCCGg-GGGUGGGGa -3'
miRNA:   3'- guACGCG--GGCA--UGGGCagCUCGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 24400 0.7 0.523686
Target:  5'- --cGC-CCCGUugCCGUCG-GCGGcGGc -3'
miRNA:   3'- guaCGcGGGCAugGGCAGCuCGCC-CU- -5'
5198 3' -60.4 NC_001798.1 + 24438 0.68 0.650378
Target:  5'- --aGCGCgCgGUGCCCGcCGGcuacggcgccGCGGGGg -3'
miRNA:   3'- guaCGCG-GgCAUGGGCaGCU----------CGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 24711 0.74 0.295407
Target:  5'- --cGCGCCCGggGCCCG-CGGGCGcGGc -3'
miRNA:   3'- guaCGCGGGCa-UGGGCaGCUCGC-CCu -5'
5198 3' -60.4 NC_001798.1 + 24870 0.67 0.699298
Target:  5'- cCGUGCGCgCCGUgaGCCUGgUCGc-CGGGGc -3'
miRNA:   3'- -GUACGCG-GGCA--UGGGC-AGCucGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 25032 0.67 0.67004
Target:  5'- --cGCGCCCGccUCCG-CGccGCGGGAg -3'
miRNA:   3'- guaCGCGGGCauGGGCaGCu-CGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 25865 0.67 0.708957
Target:  5'- cCGUGCGCgCCGcggacugGCCCGcCGA-CGGGc -3'
miRNA:   3'- -GUACGCG-GGCa------UGGGCaGCUcGCCCu -5'
5198 3' -60.4 NC_001798.1 + 25951 0.67 0.679832
Target:  5'- aGUGCG-CCGUGCgCUGgccggCGGcGCGGGAc -3'
miRNA:   3'- gUACGCgGGCAUG-GGCa----GCU-CGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 27110 0.67 0.708957
Target:  5'- gGUG-GCCCGaGCCCccccgcagGAGCGGGAg -3'
miRNA:   3'- gUACgCGGGCaUGGGcag-----CUCGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 28823 0.69 0.581509
Target:  5'- --cGgGCCCGgg-CCGUCGGGCGGu- -3'
miRNA:   3'- guaCgCGGGCaugGGCAGCUCGCCcu -5'
5198 3' -60.4 NC_001798.1 + 33533 0.66 0.765351
Target:  5'- gCAUGCacGCCCucugccCCCGgggaCGGGUGGGAg -3'
miRNA:   3'- -GUACG--CGGGcau---GGGCa---GCUCGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 34837 0.68 0.61095
Target:  5'- --gGgGCCCGggccggaCCGcCGGGCGGGGg -3'
miRNA:   3'- guaCgCGGGCaug----GGCaGCUCGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 36400 0.68 0.650378
Target:  5'- --gGCGCCgGggccccCCUGcCGGGCGGGGc -3'
miRNA:   3'- guaCGCGGgCau----GGGCaGCUCGCCCU- -5'
5198 3' -60.4 NC_001798.1 + 47685 0.69 0.571754
Target:  5'- gAUGCGCgCGcGCCCGagGGGCGaGGu -3'
miRNA:   3'- gUACGCGgGCaUGGGCagCUCGC-CCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.