Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5198 | 3' | -60.4 | NC_001798.1 | + | 154108 | 0.66 | 0.756179 |
Target: 5'- gCcgGCGCCgGggacCCCGgCG-GCGGGGa -3' miRNA: 3'- -GuaCGCGGgCau--GGGCaGCuCGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 152873 | 0.66 | 0.765351 |
Target: 5'- --gGCgGCCCGUuaaaagcugcuAauuaCCG-CGAGCGGGAa -3' miRNA: 3'- guaCG-CGGGCA-----------Ug---GGCaGCUCGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 150562 | 0.66 | 0.750626 |
Target: 5'- --aGCgGCCCGggGCCCG-CGgggcggcgcggagacGGCGGGGg -3' miRNA: 3'- guaCG-CGGGCa-UGGGCaGC---------------UCGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 149988 | 0.69 | 0.562039 |
Target: 5'- --gGCGCCCGcggACgCCGgggCGAGCGGc- -3' miRNA: 3'- guaCGCGGGCa--UG-GGCa--GCUCGCCcu -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 149435 | 0.68 | 0.601113 |
Target: 5'- -uUGCGCgCGUGCUCGggGAGCaGGGu -3' miRNA: 3'- guACGCGgGCAUGGGCagCUCG-CCCu -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 148015 | 0.71 | 0.432932 |
Target: 5'- --gGCGCCCGUccccuuccucuACCgCGUgggcgCGGGCGGGGg -3' miRNA: 3'- guaCGCGGGCA-----------UGG-GCA-----GCUCGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 135987 | 0.67 | 0.660219 |
Target: 5'- uCGUGCGCguaUGU-CCCGg-GGGCGGGGa -3' miRNA: 3'- -GUACGCGg--GCAuGGGCagCUCGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 132140 | 0.68 | 0.601113 |
Target: 5'- -cUGCGCCgcCGgggGCCgG-CGGGCGGGGc -3' miRNA: 3'- guACGCGG--GCa--UGGgCaGCUCGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 113789 | 0.7 | 0.502087 |
Target: 5'- --cGCcCCCGUGCCUGUUGGGCacagugggugcucgGGGAc -3' miRNA: 3'- guaCGcGGGCAUGGGCAGCUCG--------------CCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 111807 | 0.66 | 0.762611 |
Target: 5'- cCGUGCGCCgGUcGCgggCGUCcaggggcuggcgcgGGGCGGGAa -3' miRNA: 3'- -GUACGCGGgCA-UGg--GCAG--------------CUCGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 108885 | 0.66 | 0.746905 |
Target: 5'- --cGCGCUCGUGCgCGcgCGAuaCGGGAa -3' miRNA: 3'- guaCGCGGGCAUGgGCa-GCUc-GCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 106667 | 0.71 | 0.476336 |
Target: 5'- --cGCGCCUGcguucggucaggcUGCUCGUgCGAGCGGGc -3' miRNA: 3'- guaCGCGGGC-------------AUGGGCA-GCUCGCCCu -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 104978 | 0.71 | 0.468198 |
Target: 5'- aCAUGCGCCCGU-CUCGaaagUCGGcgcuGCGGGu -3' miRNA: 3'- -GUACGCGGGCAuGGGC----AGCU----CGCCCu -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 102444 | 0.68 | 0.61095 |
Target: 5'- --gGgGCCCGcgaacagcaUACCCGgguacgggUGGGCGGGAg -3' miRNA: 3'- guaCgCGGGC---------AUGGGCa-------GCUCGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 98856 | 0.68 | 0.630662 |
Target: 5'- aCGUGUGCCCGccCCCGaCGGGCGc-- -3' miRNA: 3'- -GUACGCGGGCauGGGCaGCUCGCccu -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 98512 | 0.66 | 0.765351 |
Target: 5'- --cGCGCCCccguagGCCCGccaugcgCGGGgGGGGc -3' miRNA: 3'- guaCGCGGGca----UGGGCa------GCUCgCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 93099 | 0.66 | 0.746905 |
Target: 5'- --cGCGCgacgCCGggaacaaggGCCCGgCGGGCGGGu -3' miRNA: 3'- guaCGCG----GGCa--------UGGGCaGCUCGCCCu -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 89910 | 1.07 | 0.001687 |
Target: 5'- uCAUGCGCCCGUACCCGUCGAGCGGGAc -3' miRNA: 3'- -GUACGCGGGCAUGGGCAGCUCGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 85242 | 0.67 | 0.67004 |
Target: 5'- --cGCGCCCGccccCCCG-CGGccgcGCGGGGc -3' miRNA: 3'- guaCGCGGGCau--GGGCaGCU----CGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 81255 | 0.66 | 0.756179 |
Target: 5'- --cGcCGCCCGcgACCCG-CGGgaccuuGCGGGGg -3' miRNA: 3'- guaC-GCGGGCa-UGGGCaGCU------CGCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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