Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5198 | 3' | -60.4 | NC_001798.1 | + | 89910 | 1.07 | 0.001687 |
Target: 5'- uCAUGCGCCCGUACCCGUCGAGCGGGAc -3' miRNA: 3'- -GUACGCGGGCAUGGGCAGCUCGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 52779 | 0.76 | 0.246143 |
Target: 5'- --gGCGcCCCGggcGCCCGU-GAGCGGGAc -3' miRNA: 3'- guaCGC-GGGCa--UGGGCAgCUCGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 24711 | 0.74 | 0.295407 |
Target: 5'- --cGCGCCCGggGCCCG-CGGGCGcGGc -3' miRNA: 3'- guaCGCGGGCa-UGGGCaGCUCGC-CCu -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 15546 | 0.73 | 0.343791 |
Target: 5'- uCGUGUGCCCGgcCCCGggCGuugccgccgccgcGGCGGGGa -3' miRNA: 3'- -GUACGCGGGCauGGGCa-GC-------------UCGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 148015 | 0.71 | 0.432932 |
Target: 5'- --gGCGCCCGUccccuuccucuACCgCGUgggcgCGGGCGGGGg -3' miRNA: 3'- guaCGCGGGCA-----------UGG-GCA-----GCUCGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 104978 | 0.71 | 0.468198 |
Target: 5'- aCAUGCGCCCGU-CUCGaaagUCGGcgcuGCGGGu -3' miRNA: 3'- -GUACGCGGGCAuGGGC----AGCU----CGCCCu -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 106667 | 0.71 | 0.476336 |
Target: 5'- --cGCGCCUGcguucggucaggcUGCUCGUgCGAGCGGGc -3' miRNA: 3'- guaCGCGGGC-------------AUGGGCA-GCUCGCCCu -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 49767 | 0.7 | 0.494665 |
Target: 5'- cCGUGCGgggaguuCCCGUggagGCCCGgCGAcuGCGGGAg -3' miRNA: 3'- -GUACGC-------GGGCA----UGGGCaGCU--CGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 113789 | 0.7 | 0.502087 |
Target: 5'- --cGCcCCCGUGCCUGUUGGGCacagugggugcucgGGGAc -3' miRNA: 3'- guaCGcGGGCAUGGGCAGCUCG--------------CCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 75976 | 0.7 | 0.504883 |
Target: 5'- cCGUGaUGCCCGUGCCCGcCGcccCGGGc -3' miRNA: 3'- -GUAC-GCGGGCAUGGGCaGCuc-GCCCu -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 24400 | 0.7 | 0.523686 |
Target: 5'- --cGC-CCCGUugCCGUCG-GCGGcGGc -3' miRNA: 3'- guaCGcGGGCAugGGCAGCuCGCC-CU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 1807 | 0.69 | 0.55237 |
Target: 5'- gCGUGCuGCCgCGagaccacggGCCCGUCG-GCGGGc -3' miRNA: 3'- -GUACG-CGG-GCa--------UGGGCAGCuCGCCCu -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 149988 | 0.69 | 0.562039 |
Target: 5'- --gGCGCCCGcggACgCCGgggCGAGCGGc- -3' miRNA: 3'- guaCGCGGGCa--UG-GGCa--GCUCGCCcu -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 47685 | 0.69 | 0.571754 |
Target: 5'- gAUGCGCgCGcGCCCGagGGGCGaGGu -3' miRNA: 3'- gUACGCGgGCaUGGGCagCUCGC-CCu -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 28823 | 0.69 | 0.581509 |
Target: 5'- --cGgGCCCGgg-CCGUCGGGCGGu- -3' miRNA: 3'- guaCgCGGGCaugGGCAGCUCGCCcu -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 65792 | 0.69 | 0.581509 |
Target: 5'- gCAUGCacaGCCCGaUGCCCccguugCGGGCGaGGAu -3' miRNA: 3'- -GUACG---CGGGC-AUGGGca----GCUCGC-CCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 149435 | 0.68 | 0.601113 |
Target: 5'- -uUGCGCgCGUGCUCGggGAGCaGGGu -3' miRNA: 3'- guACGCGgGCAUGGGCagCUCG-CCCu -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 132140 | 0.68 | 0.601113 |
Target: 5'- -cUGCGCCgcCGgggGCCgG-CGGGCGGGGc -3' miRNA: 3'- guACGCGG--GCa--UGGgCaGCUCGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 34837 | 0.68 | 0.61095 |
Target: 5'- --gGgGCCCGggccggaCCGcCGGGCGGGGg -3' miRNA: 3'- guaCgCGGGCaug----GGCaGCUCGCCCU- -5' |
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5198 | 3' | -60.4 | NC_001798.1 | + | 102444 | 0.68 | 0.61095 |
Target: 5'- --gGgGCCCGcgaacagcaUACCCGgguacgggUGGGCGGGAg -3' miRNA: 3'- guaCgCGGGC---------AUGGGCa-------GCUCGCCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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