Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5200 | 3' | -58.6 | NC_001798.1 | + | 128178 | 0.67 | 0.708556 |
Target: 5'- ----cGUcCGCUCcccucUGGCCAUCGGGCCc -3' miRNA: 3'- uagaaCA-GCGGGu----ACCGGUGGUCCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 24886 | 0.67 | 0.718454 |
Target: 5'- -cCUgGUCGCCgG-GGCC-CUGGGCCc -3' miRNA: 3'- uaGAaCAGCGGgUaCCGGuGGUCCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 61450 | 0.67 | 0.718454 |
Target: 5'- cAUCUggUGaagCGCCgG-GGCCuCCGGGCCc -3' miRNA: 3'- -UAGA--ACa--GCGGgUaCCGGuGGUCCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 153922 | 0.67 | 0.718454 |
Target: 5'- cGUCgcUGUCGUCCGccugGGgCACCAGcaGCCa -3' miRNA: 3'- -UAGa-ACAGCGGGUa---CCgGUGGUC--CGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 3975 | 0.67 | 0.724358 |
Target: 5'- cGUCgg--CGUCCAgcucgaccgccggGGCCGCCcGGCCg -3' miRNA: 3'- -UAGaacaGCGGGUa------------CCGGUGGuCCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 41200 | 0.67 | 0.728279 |
Target: 5'- ----gGUCGCCgG-GGCCACCAuGCUg -3' miRNA: 3'- uagaaCAGCGGgUaCCGGUGGUcCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 97917 | 0.67 | 0.728279 |
Target: 5'- ----cGUCGCUgcUGcGCCACCAGGUg -3' miRNA: 3'- uagaaCAGCGGguAC-CGGUGGUCCGg -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 103146 | 0.67 | 0.728279 |
Target: 5'- ----cGcCGCCCgAUGGCgCACaGGGCCa -3' miRNA: 3'- uagaaCaGCGGG-UACCG-GUGgUCCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 48347 | 0.67 | 0.747674 |
Target: 5'- ----cGUCGacgcgaCCGcGGCCGCCcgGGGCCg -3' miRNA: 3'- uagaaCAGCg-----GGUaCCGGUGG--UCCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 77419 | 0.67 | 0.747674 |
Target: 5'- -cCUgGUaGUCCA-GGCgCGCCGGGCCu -3' miRNA: 3'- uaGAaCAgCGGGUaCCG-GUGGUCCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 11225 | 0.68 | 0.658284 |
Target: 5'- cUCUUGggggGCCgUcgGGCCACUgcgGGGCCg -3' miRNA: 3'- uAGAACag--CGG-GuaCCGGUGG---UCCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 44622 | 0.68 | 0.658284 |
Target: 5'- uUCggUGggcgCGCCCGUggGGCCAUUGGGCg -3' miRNA: 3'- uAGa-ACa---GCGGGUA--CCGGUGGUCCGg -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 3476 | 0.68 | 0.668414 |
Target: 5'- uUCUgcgcgcgGUCguagcggcgGCUCAUGGCCACgGcGGCCg -3' miRNA: 3'- uAGAa------CAG---------CGGGUACCGGUGgU-CCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 67475 | 0.68 | 0.668414 |
Target: 5'- ---cUGUCGCUaaugcgguaGGCCGCgGGGCCg -3' miRNA: 3'- uagaACAGCGGgua------CCGGUGgUCCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 122593 | 0.68 | 0.678514 |
Target: 5'- gAUCgcgUGUCugcggGCCCugGGCCAcucuauCCGGGCCg -3' miRNA: 3'- -UAGa--ACAG-----CGGGuaCCGGU------GGUCCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 81000 | 0.68 | 0.678514 |
Target: 5'- gGUCUUGUgggaaGCCCcgGaGCCcCCcGGCCc -3' miRNA: 3'- -UAGAACAg----CGGGuaC-CGGuGGuCCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 17212 | 0.68 | 0.682545 |
Target: 5'- gAUCUgGUUGUCgCAcGGCCGCCuuucggggucgcgcgGGGCCg -3' miRNA: 3'- -UAGAaCAGCGG-GUaCCGGUGG---------------UCCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 56779 | 0.68 | 0.688577 |
Target: 5'- -gCggGggGCCC-UGGCCGCCGacGGCCg -3' miRNA: 3'- uaGaaCagCGGGuACCGGUGGU--CCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 3790 | 0.69 | 0.597351 |
Target: 5'- ----cGgggCGCCCGaGGCCucgaACCGGGCCc -3' miRNA: 3'- uagaaCa--GCGGGUaCCGG----UGGUCCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 82257 | 0.69 | 0.597351 |
Target: 5'- ------cCGCCUuUGGCC-CCAGGCCc -3' miRNA: 3'- uagaacaGCGGGuACCGGuGGUCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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