miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5200 3' -58.6 NC_001798.1 + 56779 0.68 0.688577
Target:  5'- -gCggGggGCCC-UGGCCGCCGacGGCCg -3'
miRNA:   3'- uaGaaCagCGGGuACCGGUGGU--CCGG- -5'
5200 3' -58.6 NC_001798.1 + 60154 0.66 0.757226
Target:  5'- cGUCUUGgCGUUgGcGGCCGCUuGGCCc -3'
miRNA:   3'- -UAGAACaGCGGgUaCCGGUGGuCCGG- -5'
5200 3' -58.6 NC_001798.1 + 61450 0.67 0.718454
Target:  5'- cAUCUggUGaagCGCCgG-GGCCuCCGGGCCc -3'
miRNA:   3'- -UAGA--ACa--GCGGgUaCCGGuGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 66014 0.66 0.80317
Target:  5'- ---cUGUCGCCCcagGGCgAUguGGCg -3'
miRNA:   3'- uagaACAGCGGGua-CCGgUGguCCGg -5'
5200 3' -58.6 NC_001798.1 + 67475 0.68 0.668414
Target:  5'- ---cUGUCGCUaaugcgguaGGCCGCgGGGCCg -3'
miRNA:   3'- uagaACAGCGGgua------CCGGUGgUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 70548 0.66 0.775993
Target:  5'- ----cG-CGCUgGaGGCCGCCGGGCUg -3'
miRNA:   3'- uagaaCaGCGGgUaCCGGUGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 75241 0.66 0.757226
Target:  5'- uUCgagGUCcacCCCAaugUGGCCGCCAcGGCg -3'
miRNA:   3'- uAGaa-CAGc--GGGU---ACCGGUGGU-CCGg -5'
5200 3' -58.6 NC_001798.1 + 77419 0.67 0.747674
Target:  5'- -cCUgGUaGUCCA-GGCgCGCCGGGCCu -3'
miRNA:   3'- uaGAaCAgCGGGUaCCG-GUGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 81000 0.68 0.678514
Target:  5'- gGUCUUGUgggaaGCCCcgGaGCCcCCcGGCCc -3'
miRNA:   3'- -UAGAACAg----CGGGuaC-CGGuGGuCCGG- -5'
5200 3' -58.6 NC_001798.1 + 82257 0.69 0.597351
Target:  5'- ------cCGCCUuUGGCC-CCAGGCCc -3'
miRNA:   3'- uagaacaGCGGGuACCGGuGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 88653 1.08 0.001577
Target:  5'- cAUCUUGUCGCCCAUGGCCACCAGGCCc -3'
miRNA:   3'- -UAGAACAGCGGGUACCGGUGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 97917 0.67 0.728279
Target:  5'- ----cGUCGCUgcUGcGCCACCAGGUg -3'
miRNA:   3'- uagaaCAGCGGguAC-CGGUGGUCCGg -5'
5200 3' -58.6 NC_001798.1 + 102534 0.7 0.547187
Target:  5'- ----cGUC-CCCGcGGCCGgCAGGCCg -3'
miRNA:   3'- uagaaCAGcGGGUaCCGGUgGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 103146 0.67 0.728279
Target:  5'- ----cGcCGCCCgAUGGCgCACaGGGCCa -3'
miRNA:   3'- uagaaCaGCGGG-UACCG-GUGgUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 104143 0.66 0.785191
Target:  5'- cGUCga--CGCCaGUGGCCGCCccGCCu -3'
miRNA:   3'- -UAGaacaGCGGgUACCGGUGGucCGG- -5'
5200 3' -58.6 NC_001798.1 + 104595 0.73 0.398978
Target:  5'- ----cGUCGCCCggGGCCGCCGGuaGCa -3'
miRNA:   3'- uagaaCAGCGGGuaCCGGUGGUC--CGg -5'
5200 3' -58.6 NC_001798.1 + 104970 0.66 0.785191
Target:  5'- gGUCUUGgacaugCGCCCGUcucgaaagucGGCgCugCGGGUg -3'
miRNA:   3'- -UAGAACa-----GCGGGUA----------CCG-GugGUCCGg -5'
5200 3' -58.6 NC_001798.1 + 111736 0.66 0.785191
Target:  5'- -gCUUGgcccccgCGCCCccGGCCccgguCCcGGCCa -3'
miRNA:   3'- uaGAACa------GCGGGuaCCGGu----GGuCCGG- -5'
5200 3' -58.6 NC_001798.1 + 112251 0.73 0.407492
Target:  5'- gGUCUuuggggccUGUC-CCCcgGaCCACCAGGCCa -3'
miRNA:   3'- -UAGA--------ACAGcGGGuaCcGGUGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 114450 0.69 0.577163
Target:  5'- ----cGcCGCCUucagccUGGCCACCgAGGCCa -3'
miRNA:   3'- uagaaCaGCGGGu-----ACCGGUGG-UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.