miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5200 3' -58.6 NC_001798.1 + 1496 0.66 0.766668
Target:  5'- ----cGUCGCCCGcgcccgaggcGGCgGCCcGGCCg -3'
miRNA:   3'- uagaaCAGCGGGUa---------CCGgUGGuCCGG- -5'
5200 3' -58.6 NC_001798.1 + 2041 0.71 0.470123
Target:  5'- ----gGUUGCCCAgGGCCGCCAgcaGGCa -3'
miRNA:   3'- uagaaCAGCGGGUaCCGGUGGU---CCGg -5'
5200 3' -58.6 NC_001798.1 + 3041 0.66 0.794253
Target:  5'- -------aGCCCcggcacGGCCGCCAGGUCg -3'
miRNA:   3'- uagaacagCGGGua----CCGGUGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 3476 0.68 0.668414
Target:  5'- uUCUgcgcgcgGUCguagcggcgGCUCAUGGCCACgGcGGCCg -3'
miRNA:   3'- uAGAa------CAG---------CGGGUACCGGUGgU-CCGG- -5'
5200 3' -58.6 NC_001798.1 + 3790 0.69 0.597351
Target:  5'- ----cGgggCGCCCGaGGCCucgaACCGGGCCc -3'
miRNA:   3'- uagaaCa--GCGGGUaCCGG----UGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 3975 0.67 0.724358
Target:  5'- cGUCgg--CGUCCAgcucgaccgccggGGCCGCCcGGCCg -3'
miRNA:   3'- -UAGaacaGCGGGUa------------CCGGUGGuCCGG- -5'
5200 3' -58.6 NC_001798.1 + 7708 0.72 0.451713
Target:  5'- ---aUGcUGCCCGcGGaCCACCGGGCCu -3'
miRNA:   3'- uagaACaGCGGGUaCC-GGUGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 11225 0.68 0.658284
Target:  5'- cUCUUGggggGCCgUcgGGCCACUgcgGGGCCg -3'
miRNA:   3'- uAGAACag--CGG-GuaCCGGUGG---UCCGG- -5'
5200 3' -58.6 NC_001798.1 + 17212 0.68 0.682545
Target:  5'- gAUCUgGUUGUCgCAcGGCCGCCuuucggggucgcgcgGGGCCg -3'
miRNA:   3'- -UAGAaCAGCGG-GUaCCGGUGG---------------UCCGG- -5'
5200 3' -58.6 NC_001798.1 + 23646 0.66 0.766668
Target:  5'- -gCggGcCGCCUGgagcGCCGCCGGGCCc -3'
miRNA:   3'- uaGaaCaGCGGGUac--CGGUGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 24886 0.67 0.718454
Target:  5'- -cCUgGUCGCCgG-GGCC-CUGGGCCc -3'
miRNA:   3'- uaGAaCAGCGGgUaCCGGuGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 31468 0.71 0.470123
Target:  5'- cGUCUccgcGcCGCCCcgcgGGCC-CCGGGCCg -3'
miRNA:   3'- -UAGAa---CaGCGGGua--CCGGuGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 41200 0.67 0.728279
Target:  5'- ----gGUCGCCgG-GGCCACCAuGCUg -3'
miRNA:   3'- uagaaCAGCGGgUaCCGGUGGUcCGG- -5'
5200 3' -58.6 NC_001798.1 + 42712 0.66 0.757226
Target:  5'- aGUCcccGUCGCCguCGUcGCCACC-GGCCg -3'
miRNA:   3'- -UAGaa-CAGCGG--GUAcCGGUGGuCCGG- -5'
5200 3' -58.6 NC_001798.1 + 42748 0.66 0.785191
Target:  5'- ----cGUCGCCCGcacagacgggcGGCgCGCgGGGCCg -3'
miRNA:   3'- uagaaCAGCGGGUa----------CCG-GUGgUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 44622 0.68 0.658284
Target:  5'- uUCggUGggcgCGCCCGUggGGCCAUUGGGCg -3'
miRNA:   3'- uAGa-ACa---GCGGGUA--CCGGUGGUCCGg -5'
5200 3' -58.6 NC_001798.1 + 47179 0.66 0.80317
Target:  5'- ---aUGUCaGCgggCAcUGGCCGCCGGGUCa -3'
miRNA:   3'- uagaACAG-CGg--GU-ACCGGUGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 48347 0.67 0.747674
Target:  5'- ----cGUCGacgcgaCCGcGGCCGCCcgGGGCCg -3'
miRNA:   3'- uagaaCAGCg-----GGUaCCGGUGG--UCCGG- -5'
5200 3' -58.6 NC_001798.1 + 55003 0.66 0.80317
Target:  5'- cGUCUUGcCGgCgG-GGCCGCCcuGCCg -3'
miRNA:   3'- -UAGAACaGCgGgUaCCGGUGGucCGG- -5'
5200 3' -58.6 NC_001798.1 + 55144 0.69 0.587241
Target:  5'- ---cUGUCGCCCAUGcCCGCCc-GCCc -3'
miRNA:   3'- uagaACAGCGGGUACcGGUGGucCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.