miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5200 3' -58.6 NC_001798.1 + 153922 0.67 0.718454
Target:  5'- cGUCgcUGUCGUCCGccugGGgCACCAGcaGCCa -3'
miRNA:   3'- -UAGa-ACAGCGGGUa---CCgGUGGUC--CGG- -5'
5200 3' -58.6 NC_001798.1 + 152351 0.66 0.757226
Target:  5'- aGUCUcUGUCuCUCcgGGucuccuccucCCGCCGGGCCg -3'
miRNA:   3'- -UAGA-ACAGcGGGuaCC----------GGUGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 147238 0.66 0.785191
Target:  5'- ----gGggGCCCcggGGCC-CCGGGCCg -3'
miRNA:   3'- uagaaCagCGGGua-CCGGuGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 135172 0.7 0.514809
Target:  5'- gGUUUUGUUucuccgggcuccagGCCCAgcuccUGGCCGCCcucgcGGGCCu -3'
miRNA:   3'- -UAGAACAG--------------CGGGU-----ACCGGUGG-----UCCGG- -5'
5200 3' -58.6 NC_001798.1 + 133117 0.72 0.424857
Target:  5'- uGUCUUcgcGUC-CCCAUGGCCGCCcauagcAGcGCCa -3'
miRNA:   3'- -UAGAA---CAGcGGGUACCGGUGG------UC-CGG- -5'
5200 3' -58.6 NC_001798.1 + 132956 0.72 0.431039
Target:  5'- cGUCccUGUCgGCCCA-GGCCGCCgagacggaggagguGGGCCu -3'
miRNA:   3'- -UAGa-ACAG-CGGGUaCCGGUGG--------------UCCGG- -5'
5200 3' -58.6 NC_001798.1 + 128178 0.67 0.708556
Target:  5'- ----cGUcCGCUCcccucUGGCCAUCGGGCCc -3'
miRNA:   3'- uagaaCA-GCGGGu----ACCGGUGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 127599 0.67 0.707563
Target:  5'- cGUCcUGUCGUCgGUGucgcuGCCGCCcgagcugAGGCCg -3'
miRNA:   3'- -UAGaACAGCGGgUAC-----CGGUGG-------UCCGG- -5'
5200 3' -58.6 NC_001798.1 + 127018 0.7 0.55713
Target:  5'- ---gUGUCGCuCCGgccGGCCGuCCuGGCCg -3'
miRNA:   3'- uagaACAGCG-GGUa--CCGGU-GGuCCGG- -5'
5200 3' -58.6 NC_001798.1 + 125860 0.71 0.488908
Target:  5'- uUgUUGgCGCCUuuAUGGCCGCCAaggcGGCCc -3'
miRNA:   3'- uAgAACaGCGGG--UACCGGUGGU----CCGG- -5'
5200 3' -58.6 NC_001798.1 + 125063 0.66 0.775993
Target:  5'- ----cGUCuGCCCGUGGguggccacguCCACCuuGGCCc -3'
miRNA:   3'- uagaaCAG-CGGGUACC----------GGUGGu-CCGG- -5'
5200 3' -58.6 NC_001798.1 + 124008 0.72 0.451713
Target:  5'- gGUCgcucUGUC-CCCcgGGCaGCCGGGCCc -3'
miRNA:   3'- -UAGa---ACAGcGGGuaCCGgUGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 123378 0.69 0.627804
Target:  5'- cUCUggcGUC-CCCA-GGCgaCGCCAGGCCc -3'
miRNA:   3'- uAGAa--CAGcGGGUaCCG--GUGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 122593 0.68 0.678514
Target:  5'- gAUCgcgUGUCugcggGCCCugGGCCAcucuauCCGGGCCg -3'
miRNA:   3'- -UAGa--ACAG-----CGGGuaCCGGU------GGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 122025 0.75 0.313159
Target:  5'- ----aGggCGCCC-UGGuCCACCAGGCCg -3'
miRNA:   3'- uagaaCa-GCGGGuACC-GGUGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 120544 0.7 0.527477
Target:  5'- ----cGUacaGCUCGggGGCCAUCAGGCCg -3'
miRNA:   3'- uagaaCAg--CGGGUa-CCGGUGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 119378 0.72 0.451713
Target:  5'- -gCUgGUCGCCUGgcUGGCgCACgCGGGCCa -3'
miRNA:   3'- uaGAaCAGCGGGU--ACCG-GUG-GUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 119018 0.66 0.766668
Target:  5'- -gCUgGUCGCCCggGGCauCCGGGaCCu -3'
miRNA:   3'- uaGAaCAGCGGGuaCCGguGGUCC-GG- -5'
5200 3' -58.6 NC_001798.1 + 114775 0.66 0.80317
Target:  5'- -----aUCGCCgCGaGGCCAUCgAGGCCu -3'
miRNA:   3'- uagaacAGCGG-GUaCCGGUGG-UCCGG- -5'
5200 3' -58.6 NC_001798.1 + 114450 0.69 0.577163
Target:  5'- ----cGcCGCCUucagccUGGCCACCgAGGCCa -3'
miRNA:   3'- uagaaCaGCGGGu-----ACCGGUGG-UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.