miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5200 3' -58.6 NC_001798.1 + 88653 1.08 0.001577
Target:  5'- cAUCUUGUCGCCCAUGGCCACCAGGCCc -3'
miRNA:   3'- -UAGAACAGCGGGUACCGGUGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 122025 0.75 0.313159
Target:  5'- ----aGggCGCCC-UGGuCCACCAGGCCg -3'
miRNA:   3'- uagaaCa-GCGGGuACC-GGUGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 104595 0.73 0.398978
Target:  5'- ----cGUCGCCCggGGCCGCCGGuaGCa -3'
miRNA:   3'- uagaaCAGCGGGuaCCGGUGGUC--CGg -5'
5200 3' -58.6 NC_001798.1 + 112251 0.73 0.407492
Target:  5'- gGUCUuuggggccUGUC-CCCcgGaCCACCAGGCCa -3'
miRNA:   3'- -UAGA--------ACAGcGGGuaCcGGUGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 133117 0.72 0.424857
Target:  5'- uGUCUUcgcGUC-CCCAUGGCCGCCcauagcAGcGCCa -3'
miRNA:   3'- -UAGAA---CAGcGGGUACCGGUGG------UC-CGG- -5'
5200 3' -58.6 NC_001798.1 + 132956 0.72 0.431039
Target:  5'- cGUCccUGUCgGCCCA-GGCCGCCgagacggaggagguGGGCCu -3'
miRNA:   3'- -UAGa-ACAG-CGGGUaCCGGUGG--------------UCCGG- -5'
5200 3' -58.6 NC_001798.1 + 119378 0.72 0.451713
Target:  5'- -gCUgGUCGCCUGgcUGGCgCACgCGGGCCa -3'
miRNA:   3'- uaGAaCAGCGGGU--ACCG-GUG-GUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 124008 0.72 0.451713
Target:  5'- gGUCgcucUGUC-CCCcgGGCaGCCGGGCCc -3'
miRNA:   3'- -UAGa---ACAGcGGGuaCCGgUGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 7708 0.72 0.451713
Target:  5'- ---aUGcUGCCCGcGGaCCACCGGGCCu -3'
miRNA:   3'- uagaACaGCGGGUaCC-GGUGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 2041 0.71 0.470123
Target:  5'- ----gGUUGCCCAgGGCCGCCAgcaGGCa -3'
miRNA:   3'- uagaaCAGCGGGUaCCGGUGGU---CCGg -5'
5200 3' -58.6 NC_001798.1 + 31468 0.71 0.470123
Target:  5'- cGUCUccgcGcCGCCCcgcgGGCC-CCGGGCCg -3'
miRNA:   3'- -UAGAa---CaGCGGGua--CCGGuGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 125860 0.71 0.488908
Target:  5'- uUgUUGgCGCCUuuAUGGCCGCCAaggcGGCCc -3'
miRNA:   3'- uAgAACaGCGGG--UACCGGUGGU----CCGG- -5'
5200 3' -58.6 NC_001798.1 + 135172 0.7 0.514809
Target:  5'- gGUUUUGUUucuccgggcuccagGCCCAgcuccUGGCCGCCcucgcGGGCCu -3'
miRNA:   3'- -UAGAACAG--------------CGGGU-----ACCGGUGG-----UCCGG- -5'
5200 3' -58.6 NC_001798.1 + 120544 0.7 0.527477
Target:  5'- ----cGUacaGCUCGggGGCCAUCAGGCCg -3'
miRNA:   3'- uagaaCAg--CGGGUa-CCGGUGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 102534 0.7 0.547187
Target:  5'- ----cGUC-CCCGcGGCCGgCAGGCCg -3'
miRNA:   3'- uagaaCAGcGGGUaCCGGUgGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 127018 0.7 0.55713
Target:  5'- ---gUGUCGCuCCGgccGGCCGuCCuGGCCg -3'
miRNA:   3'- uagaACAGCG-GGUa--CCGGU-GGuCCGG- -5'
5200 3' -58.6 NC_001798.1 + 114450 0.69 0.577163
Target:  5'- ----cGcCGCCUucagccUGGCCACCgAGGCCa -3'
miRNA:   3'- uagaaCaGCGGGu-----ACCGGUGG-UCCGG- -5'
5200 3' -58.6 NC_001798.1 + 55144 0.69 0.587241
Target:  5'- ---cUGUCGCCCAUGcCCGCCc-GCCc -3'
miRNA:   3'- uagaACAGCGGGUACcGGUGGucCGG- -5'
5200 3' -58.6 NC_001798.1 + 3790 0.69 0.597351
Target:  5'- ----cGgggCGCCCGaGGCCucgaACCGGGCCc -3'
miRNA:   3'- uagaaCa--GCGGGUaCCGG----UGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 82257 0.69 0.597351
Target:  5'- ------cCGCCUuUGGCC-CCAGGCCc -3'
miRNA:   3'- uagaacaGCGGGuACCGGuGGUCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.