Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5200 | 3' | -58.6 | NC_001798.1 | + | 114775 | 0.66 | 0.80317 |
Target: 5'- -----aUCGCCgCGaGGCCAUCgAGGCCu -3' miRNA: 3'- uagaacAGCGG-GUaCCGGUGG-UCCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 55003 | 0.66 | 0.80317 |
Target: 5'- cGUCUUGcCGgCgG-GGCCGCCcuGCCg -3' miRNA: 3'- -UAGAACaGCgGgUaCCGGUGGucCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 47179 | 0.66 | 0.80317 |
Target: 5'- ---aUGUCaGCgggCAcUGGCCGCCGGGUCa -3' miRNA: 3'- uagaACAG-CGg--GU-ACCGGUGGUCCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 66014 | 0.66 | 0.80317 |
Target: 5'- ---cUGUCGCCCcagGGCgAUguGGCg -3' miRNA: 3'- uagaACAGCGGGua-CCGgUGguCCGg -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 3041 | 0.66 | 0.794253 |
Target: 5'- -------aGCCCcggcacGGCCGCCAGGUCg -3' miRNA: 3'- uagaacagCGGGua----CCGGUGGUCCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 111736 | 0.66 | 0.785191 |
Target: 5'- -gCUUGgcccccgCGCCCccGGCCccgguCCcGGCCa -3' miRNA: 3'- uaGAACa------GCGGGuaCCGGu----GGuCCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 147238 | 0.66 | 0.785191 |
Target: 5'- ----gGggGCCCcggGGCC-CCGGGCCg -3' miRNA: 3'- uagaaCagCGGGua-CCGGuGGUCCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 42748 | 0.66 | 0.785191 |
Target: 5'- ----cGUCGCCCGcacagacgggcGGCgCGCgGGGCCg -3' miRNA: 3'- uagaaCAGCGGGUa----------CCG-GUGgUCCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 104970 | 0.66 | 0.785191 |
Target: 5'- gGUCUUGgacaugCGCCCGUcucgaaagucGGCgCugCGGGUg -3' miRNA: 3'- -UAGAACa-----GCGGGUA----------CCG-GugGUCCGg -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 104143 | 0.66 | 0.785191 |
Target: 5'- cGUCga--CGCCaGUGGCCGCCccGCCu -3' miRNA: 3'- -UAGaacaGCGGgUACCGGUGGucCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 125063 | 0.66 | 0.775993 |
Target: 5'- ----cGUCuGCCCGUGGguggccacguCCACCuuGGCCc -3' miRNA: 3'- uagaaCAG-CGGGUACC----------GGUGGu-CCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 70548 | 0.66 | 0.775993 |
Target: 5'- ----cG-CGCUgGaGGCCGCCGGGCUg -3' miRNA: 3'- uagaaCaGCGGgUaCCGGUGGUCCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 119018 | 0.66 | 0.766668 |
Target: 5'- -gCUgGUCGCCCggGGCauCCGGGaCCu -3' miRNA: 3'- uaGAaCAGCGGGuaCCGguGGUCC-GG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 23646 | 0.66 | 0.766668 |
Target: 5'- -gCggGcCGCCUGgagcGCCGCCGGGCCc -3' miRNA: 3'- uaGaaCaGCGGGUac--CGGUGGUCCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 1496 | 0.66 | 0.766668 |
Target: 5'- ----cGUCGCCCGcgcccgaggcGGCgGCCcGGCCg -3' miRNA: 3'- uagaaCAGCGGGUa---------CCGgUGGuCCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 75241 | 0.66 | 0.757226 |
Target: 5'- uUCgagGUCcacCCCAaugUGGCCGCCAcGGCg -3' miRNA: 3'- uAGaa-CAGc--GGGU---ACCGGUGGU-CCGg -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 42712 | 0.66 | 0.757226 |
Target: 5'- aGUCcccGUCGCCguCGUcGCCACC-GGCCg -3' miRNA: 3'- -UAGaa-CAGCGG--GUAcCGGUGGuCCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 152351 | 0.66 | 0.757226 |
Target: 5'- aGUCUcUGUCuCUCcgGGucuccuccucCCGCCGGGCCg -3' miRNA: 3'- -UAGA-ACAGcGGGuaCC----------GGUGGUCCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 60154 | 0.66 | 0.757226 |
Target: 5'- cGUCUUGgCGUUgGcGGCCGCUuGGCCc -3' miRNA: 3'- -UAGAACaGCGGgUaCCGGUGGuCCGG- -5' |
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5200 | 3' | -58.6 | NC_001798.1 | + | 48347 | 0.67 | 0.747674 |
Target: 5'- ----cGUCGacgcgaCCGcGGCCGCCcgGGGCCg -3' miRNA: 3'- uagaaCAGCg-----GGUaCCGGUGG--UCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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