miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5200 3' -58.6 NC_001798.1 + 77419 0.67 0.747674
Target:  5'- -cCUgGUaGUCCA-GGCgCGCCGGGCCu -3'
miRNA:   3'- uaGAaCAgCGGGUaCCG-GUGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 103146 0.67 0.728279
Target:  5'- ----cGcCGCCCgAUGGCgCACaGGGCCa -3'
miRNA:   3'- uagaaCaGCGGG-UACCG-GUGgUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 97917 0.67 0.728279
Target:  5'- ----cGUCGCUgcUGcGCCACCAGGUg -3'
miRNA:   3'- uagaaCAGCGGguAC-CGGUGGUCCGg -5'
5200 3' -58.6 NC_001798.1 + 41200 0.67 0.728279
Target:  5'- ----gGUCGCCgG-GGCCACCAuGCUg -3'
miRNA:   3'- uagaaCAGCGGgUaCCGGUGGUcCGG- -5'
5200 3' -58.6 NC_001798.1 + 3975 0.67 0.724358
Target:  5'- cGUCgg--CGUCCAgcucgaccgccggGGCCGCCcGGCCg -3'
miRNA:   3'- -UAGaacaGCGGGUa------------CCGGUGGuCCGG- -5'
5200 3' -58.6 NC_001798.1 + 24886 0.67 0.718454
Target:  5'- -cCUgGUCGCCgG-GGCC-CUGGGCCc -3'
miRNA:   3'- uaGAaCAGCGGgUaCCGGuGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 61450 0.67 0.718454
Target:  5'- cAUCUggUGaagCGCCgG-GGCCuCCGGGCCc -3'
miRNA:   3'- -UAGA--ACa--GCGGgUaCCGGuGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 153922 0.67 0.718454
Target:  5'- cGUCgcUGUCGUCCGccugGGgCACCAGcaGCCa -3'
miRNA:   3'- -UAGa-ACAGCGGGUa---CCgGUGGUC--CGG- -5'
5200 3' -58.6 NC_001798.1 + 128178 0.67 0.708556
Target:  5'- ----cGUcCGCUCcccucUGGCCAUCGGGCCc -3'
miRNA:   3'- uagaaCA-GCGGGu----ACCGGUGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 127599 0.67 0.707563
Target:  5'- cGUCcUGUCGUCgGUGucgcuGCCGCCcgagcugAGGCCg -3'
miRNA:   3'- -UAGaACAGCGGgUAC-----CGGUGG-------UCCGG- -5'
5200 3' -58.6 NC_001798.1 + 56779 0.68 0.688577
Target:  5'- -gCggGggGCCC-UGGCCGCCGacGGCCg -3'
miRNA:   3'- uaGaaCagCGGGuACCGGUGGU--CCGG- -5'
5200 3' -58.6 NC_001798.1 + 17212 0.68 0.682545
Target:  5'- gAUCUgGUUGUCgCAcGGCCGCCuuucggggucgcgcgGGGCCg -3'
miRNA:   3'- -UAGAaCAGCGG-GUaCCGGUGG---------------UCCGG- -5'
5200 3' -58.6 NC_001798.1 + 81000 0.68 0.678514
Target:  5'- gGUCUUGUgggaaGCCCcgGaGCCcCCcGGCCc -3'
miRNA:   3'- -UAGAACAg----CGGGuaC-CGGuGGuCCGG- -5'
5200 3' -58.6 NC_001798.1 + 122593 0.68 0.678514
Target:  5'- gAUCgcgUGUCugcggGCCCugGGCCAcucuauCCGGGCCg -3'
miRNA:   3'- -UAGa--ACAG-----CGGGuaCCGGU------GGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 67475 0.68 0.668414
Target:  5'- ---cUGUCGCUaaugcgguaGGCCGCgGGGCCg -3'
miRNA:   3'- uagaACAGCGGgua------CCGGUGgUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 3476 0.68 0.668414
Target:  5'- uUCUgcgcgcgGUCguagcggcgGCUCAUGGCCACgGcGGCCg -3'
miRNA:   3'- uAGAa------CAG---------CGGGUACCGGUGgU-CCGG- -5'
5200 3' -58.6 NC_001798.1 + 11225 0.68 0.658284
Target:  5'- cUCUUGggggGCCgUcgGGCCACUgcgGGGCCg -3'
miRNA:   3'- uAGAACag--CGG-GuaCCGGUGG---UCCGG- -5'
5200 3' -58.6 NC_001798.1 + 44622 0.68 0.658284
Target:  5'- uUCggUGggcgCGCCCGUggGGCCAUUGGGCg -3'
miRNA:   3'- uAGa-ACa---GCGGGUA--CCGGUGGUCCGg -5'
5200 3' -58.6 NC_001798.1 + 123378 0.69 0.627804
Target:  5'- cUCUggcGUC-CCCA-GGCgaCGCCAGGCCc -3'
miRNA:   3'- uAGAa--CAGcGGGUaCCG--GUGGUCCGG- -5'
5200 3' -58.6 NC_001798.1 + 82257 0.69 0.597351
Target:  5'- ------cCGCCUuUGGCC-CCAGGCCc -3'
miRNA:   3'- uagaacaGCGGGuACCGGuGGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.