miRNA display CGI


Results 41 - 60 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5200 5' -49.6 NC_001798.1 + 2681 0.66 0.995655
Target:  5'- gGAGGCgggCGCGGCgaGCGAGucggccgcgGCGAcgGUGu -3'
miRNA:   3'- aCUCCG---GCGCCG--UGUUU---------UGCUuuUAC- -5'
5200 5' -49.6 NC_001798.1 + 25342 0.66 0.995655
Target:  5'- -cGGGCCGUGGC-CGAGcucACGGAc--- -3'
miRNA:   3'- acUCCGGCGCCGuGUUU---UGCUUuuac -5'
5200 5' -49.6 NC_001798.1 + 124442 0.66 0.995655
Target:  5'- -cGGGCCGUGGC-CAGAGCc------ -3'
miRNA:   3'- acUCCGGCGCCGuGUUUUGcuuuuac -5'
5200 5' -49.6 NC_001798.1 + 25965 0.66 0.995655
Target:  5'- --uGGCCgGCGGCGCGGGACc------ -3'
miRNA:   3'- acuCCGG-CGCCGUGUUUUGcuuuuac -5'
5200 5' -49.6 NC_001798.1 + 99225 0.67 0.994917
Target:  5'- cGaAGGUCGCcacgcGCACGAGcCGggGGUGg -3'
miRNA:   3'- aC-UCCGGCGc----CGUGUUUuGCuuUUAC- -5'
5200 5' -49.6 NC_001798.1 + 120373 0.67 0.994917
Target:  5'- cGAGGCUGUG-CACGAcgcAGCGGGcGAUGu -3'
miRNA:   3'- aCUCCGGCGCcGUGUU---UUGCUU-UUAC- -5'
5200 5' -49.6 NC_001798.1 + 4205 0.67 0.994917
Target:  5'- cGuGGuCUGCGGCGCu-GGCGggGGc- -3'
miRNA:   3'- aCuCC-GGCGCCGUGuuUUGCuuUUac -5'
5200 5' -49.6 NC_001798.1 + 76477 0.67 0.994917
Target:  5'- aGcAGG-CGCGGCGCAGcuCGggGcUGg -3'
miRNA:   3'- aC-UCCgGCGCCGUGUUuuGCuuUuAC- -5'
5200 5' -49.6 NC_001798.1 + 147166 0.67 0.994917
Target:  5'- cGGGuaGCCGCccGGCGCcGGGCGGAAGg- -3'
miRNA:   3'- aCUC--CGGCG--CCGUGuUUUGCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 77479 0.67 0.994917
Target:  5'- cGAuGCCGCGGCccGCGcGACGAc---- -3'
miRNA:   3'- aCUcCGGCGCCG--UGUuUUGCUuuuac -5'
5200 5' -49.6 NC_001798.1 + 83348 0.67 0.994758
Target:  5'- --cGGCCGCGGCgucgcccGCGAAcauaggcugcgggGCGAAcGUGu -3'
miRNA:   3'- acuCCGGCGCCG-------UGUUU-------------UGCUUuUAC- -5'
5200 5' -49.6 NC_001798.1 + 112509 0.67 0.994081
Target:  5'- --uGGCgGUGGCGC-GAACGGGAcccGUGg -3'
miRNA:   3'- acuCCGgCGCCGUGuUUUGCUUU---UAC- -5'
5200 5' -49.6 NC_001798.1 + 88076 0.67 0.994081
Target:  5'- cUGGGGCgGCGGCGuCuagcucGCGGAGGg- -3'
miRNA:   3'- -ACUCCGgCGCCGU-Guuu---UGCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 27143 0.67 0.993138
Target:  5'- -aAGGCaCGgGGCGCGGGAgGGAGGg- -3'
miRNA:   3'- acUCCG-GCgCCGUGUUUUgCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 34691 0.67 0.993138
Target:  5'- aGGGG-CGCGGCGgGAcgggggaaGACGAGGAg- -3'
miRNA:   3'- aCUCCgGCGCCGUgUU--------UUGCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 38183 0.67 0.993138
Target:  5'- aUGGGGCCGCuGGUcgaGCAGGaggcGCGGAc--- -3'
miRNA:   3'- -ACUCCGGCG-CCG---UGUUU----UGCUUuuac -5'
5200 5' -49.6 NC_001798.1 + 53106 0.67 0.993138
Target:  5'- -cGGGCgCGCGGCGCGAGcucccuGCGGc---- -3'
miRNA:   3'- acUCCG-GCGCCGUGUUU------UGCUuuuac -5'
5200 5' -49.6 NC_001798.1 + 102186 0.67 0.992833
Target:  5'- gUGGGGCCcggaagccuggcgcGCGGCGCGc--CGGGAGUc -3'
miRNA:   3'- -ACUCCGG--------------CGCCGUGUuuuGCUUUUAc -5'
5200 5' -49.6 NC_001798.1 + 59070 0.67 0.992079
Target:  5'- -cGGGCCGCGcG-ACAGAACGAc---- -3'
miRNA:   3'- acUCCGGCGC-CgUGUUUUGCUuuuac -5'
5200 5' -49.6 NC_001798.1 + 54748 0.67 0.992079
Target:  5'- gGAGGCCGaacCGGaC-CAGAugGAAAAc- -3'
miRNA:   3'- aCUCCGGC---GCC-GuGUUUugCUUUUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.