miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5200 5' -49.6 NC_001798.1 + 92036 0.66 0.997361
Target:  5'- aGGGGCCGCucGGCGaacGGGCGGGu--- -3'
miRNA:   3'- aCUCCGGCG--CCGUgu-UUUGCUUuuac -5'
5200 5' -49.6 NC_001798.1 + 146082 0.66 0.997361
Target:  5'- aGGGGUC-CGGgGCGAGGCGGGc--- -3'
miRNA:   3'- aCUCCGGcGCCgUGUUUUGCUUuuac -5'
5200 5' -49.6 NC_001798.1 + 3997 0.66 0.996869
Target:  5'- cGGGGCCGCccGGCcguGAAGCGGcccGUGg -3'
miRNA:   3'- aCUCCGGCG--CCGug-UUUUGCUuu-UAC- -5'
5200 5' -49.6 NC_001798.1 + 12257 0.66 0.996869
Target:  5'- gUGGGGCCGCGG-ACGAccaGGCc--GGUGg -3'
miRNA:   3'- -ACUCCGGCGCCgUGUU---UUGcuuUUAC- -5'
5200 5' -49.6 NC_001798.1 + 11231 0.66 0.996869
Target:  5'- gGGGGCCGUcgGGC-CAcuGCGggGc-- -3'
miRNA:   3'- aCUCCGGCG--CCGuGUuuUGCuuUuac -5'
5200 5' -49.6 NC_001798.1 + 43941 0.66 0.996869
Target:  5'- cGAGGUcaaggaCGCGGCAC----UGAGGGUGu -3'
miRNA:   3'- aCUCCG------GCGCCGUGuuuuGCUUUUAC- -5'
5200 5' -49.6 NC_001798.1 + 52170 0.66 0.996869
Target:  5'- gGAGGCCGCguuugcggGGCGCGuccUGGAcGUGc -3'
miRNA:   3'- aCUCCGGCG--------CCGUGUuuuGCUUuUAC- -5'
5200 5' -49.6 NC_001798.1 + 130879 0.66 0.996869
Target:  5'- cGAGGCaCGCaaaGUGCAGGACGuAGAUa -3'
miRNA:   3'- aCUCCG-GCGc--CGUGUUUUGCuUUUAc -5'
5200 5' -49.6 NC_001798.1 + 69023 0.66 0.996869
Target:  5'- cGuAGGCgGCGGCGCAc-GCGGc---- -3'
miRNA:   3'- aC-UCCGgCGCCGUGUuuUGCUuuuac -5'
5200 5' -49.6 NC_001798.1 + 148096 0.66 0.996869
Target:  5'- cGGGGCCGCuagggaaagguaGGCACGcgcGCGGu-GUGu -3'
miRNA:   3'- aCUCCGGCG------------CCGUGUuu-UGCUuuUAC- -5'
5200 5' -49.6 NC_001798.1 + 114579 0.66 0.996815
Target:  5'- gGGGGCguuugagCGCGGCACGGc-CGAccAGAUGc -3'
miRNA:   3'- aCUCCG-------GCGCCGUGUUuuGCU--UUUAC- -5'
5200 5' -49.6 NC_001798.1 + 108690 0.66 0.996538
Target:  5'- cGGGGCCGCccgcggggacaccgaGGCAUccGACGAcGAa- -3'
miRNA:   3'- aCUCCGGCG---------------CCGUGuuUUGCUuUUac -5'
5200 5' -49.6 NC_001798.1 + 14135 0.66 0.996302
Target:  5'- aUGGGGUgGgGGCAaggccagaAAGGCGAAAAa- -3'
miRNA:   3'- -ACUCCGgCgCCGUg-------UUUUGCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 14918 0.66 0.996302
Target:  5'- gGAGGCCGUuaGGaacCAGAACagGggGAUGu -3'
miRNA:   3'- aCUCCGGCG--CCgu-GUUUUG--CuuUUAC- -5'
5200 5' -49.6 NC_001798.1 + 36936 0.66 0.996302
Target:  5'- gGGGGCUG-GGCaugcccacgcauGCAGggauGACGGAGAUGa -3'
miRNA:   3'- aCUCCGGCgCCG------------UGUU----UUGCUUUUAC- -5'
5200 5' -49.6 NC_001798.1 + 40125 0.66 0.996302
Target:  5'- gGucGCCGgGGCugGGAugGcgGGUGu -3'
miRNA:   3'- aCucCGGCgCCGugUUUugCuuUUAC- -5'
5200 5' -49.6 NC_001798.1 + 46201 0.66 0.996302
Target:  5'- --cGGCCGCG-CGCAAuacGCGGAGGg- -3'
miRNA:   3'- acuCCGGCGCcGUGUUu--UGCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 78053 0.66 0.996302
Target:  5'- cGcGGCUGCuGCGCAucGCGGAGGg- -3'
miRNA:   3'- aCuCCGGCGcCGUGUuuUGCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 149654 0.66 0.996302
Target:  5'- gUGAGGCCG-GGCGCcGGgucGCGGGc--- -3'
miRNA:   3'- -ACUCCGGCgCCGUGuUU---UGCUUuuac -5'
5200 5' -49.6 NC_001798.1 + 124442 0.66 0.995655
Target:  5'- -cGGGCCGUGGC-CAGAGCc------ -3'
miRNA:   3'- acUCCGGCGCCGuGUUUUGcuuuuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.