miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5200 5' -49.6 NC_001798.1 + 12721 0.68 0.988107
Target:  5'- gGGGGCguggUGCGGCGCGAcguccuggaucGACGGGAu-- -3'
miRNA:   3'- aCUCCG----GCGCCGUGUU-----------UUGCUUUuac -5'
5200 5' -49.6 NC_001798.1 + 12911 0.66 0.997788
Target:  5'- uUGGGGCCGUGcCACccGGCGAu---- -3'
miRNA:   3'- -ACUCCGGCGCcGUGuuUUGCUuuuac -5'
5200 5' -49.6 NC_001798.1 + 14135 0.66 0.996302
Target:  5'- aUGGGGUgGgGGCAaggccagaAAGGCGAAAAa- -3'
miRNA:   3'- -ACUCCGgCgCCGUg-------UUUUGCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 14918 0.66 0.996302
Target:  5'- gGAGGCCGUuaGGaacCAGAACagGggGAUGu -3'
miRNA:   3'- aCUCCGGCG--CCgu-GUUUUG--CuuUUAC- -5'
5200 5' -49.6 NC_001798.1 + 15298 0.67 0.990893
Target:  5'- gGuGGUCGCGGCGacCGAAACGu---UGg -3'
miRNA:   3'- aCuCCGGCGCCGU--GUUUUGCuuuuAC- -5'
5200 5' -49.6 NC_001798.1 + 15328 0.7 0.963408
Target:  5'- cGAGGgCCcCGGCGCGGuAGCGggGGg- -3'
miRNA:   3'- aCUCC-GGcGCCGUGUU-UUGCuuUUac -5'
5200 5' -49.6 NC_001798.1 + 15375 0.66 0.997788
Target:  5'- --cGGCCGUgGGCGCG--GCGGAGGc- -3'
miRNA:   3'- acuCCGGCG-CCGUGUuuUGCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 17985 0.73 0.874026
Target:  5'- gGGGGCugCGCGGCcCGGAACagGAGGAUGg -3'
miRNA:   3'- aCUCCG--GCGCCGuGUUUUG--CUUUUAC- -5'
5200 5' -49.6 NC_001798.1 + 22301 0.69 0.978265
Target:  5'- aGcGGCgGCGGCGCGAccAACGGGc--- -3'
miRNA:   3'- aCuCCGgCGCCGUGUU--UUGCUUuuac -5'
5200 5' -49.6 NC_001798.1 + 22360 0.69 0.9806
Target:  5'- cGGGGCCGCG-CAUAAuGCGGu---- -3'
miRNA:   3'- aCUCCGGCGCcGUGUUuUGCUuuuac -5'
5200 5' -49.6 NC_001798.1 + 22746 0.69 0.972983
Target:  5'- cGGGGCCGaGGuCGCGAuggcgGACGAGGAc- -3'
miRNA:   3'- aCUCCGGCgCC-GUGUU-----UUGCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 22789 0.73 0.881538
Target:  5'- -cGGGCCGCGGCG-GAGACGAc---- -3'
miRNA:   3'- acUCCGGCGCCGUgUUUUGCUuuuac -5'
5200 5' -49.6 NC_001798.1 + 24187 0.66 0.997788
Target:  5'- cUGGGGCC-UGGCGCAcguGGCGGc---- -3'
miRNA:   3'- -ACUCCGGcGCCGUGUu--UUGCUuuuac -5'
5200 5' -49.6 NC_001798.1 + 25342 0.66 0.995655
Target:  5'- -cGGGCCGUGGC-CGAGcucACGGAc--- -3'
miRNA:   3'- acUCCGGCGCCGuGUUU---UGCUUuuac -5'
5200 5' -49.6 NC_001798.1 + 25965 0.66 0.995655
Target:  5'- --uGGCCgGCGGCGCGGGACc------ -3'
miRNA:   3'- acuCCGG-CGCCGUGUUUUGcuuuuac -5'
5200 5' -49.6 NC_001798.1 + 26375 0.68 0.986486
Target:  5'- -cGGGCCGCGGCGgGAGuucugcgcGCGGGc--- -3'
miRNA:   3'- acUCCGGCGCCGUgUUU--------UGCUUuuac -5'
5200 5' -49.6 NC_001798.1 + 26518 0.72 0.915337
Target:  5'- --uGGCCGCGGCgggcgGCGGcgUGGAGGUGg -3'
miRNA:   3'- acuCCGGCGCCG-----UGUUuuGCUUUUAC- -5'
5200 5' -49.6 NC_001798.1 + 27143 0.67 0.993138
Target:  5'- -aAGGCaCGgGGCGCGGGAgGGAGGg- -3'
miRNA:   3'- acUCCG-GCgCCGUGUUUUgCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 27181 0.79 0.566852
Target:  5'- cGGGGCCGCgGGCGCGGGGgGAGGGg- -3'
miRNA:   3'- aCUCCGGCG-CCGUGUUUUgCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 28677 0.68 0.984701
Target:  5'- cGuGGCgGCGGC-CGAGGCGGu---- -3'
miRNA:   3'- aCuCCGgCGCCGuGUUUUGCUuuuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.