miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5200 5' -49.6 NC_001798.1 + 1719 0.66 0.997361
Target:  5'- gGAGGCCagcacgguGCGGCGCAGGucccGCGc----- -3'
miRNA:   3'- aCUCCGG--------CGCCGUGUUU----UGCuuuuac -5'
5200 5' -49.6 NC_001798.1 + 1838 0.66 0.997361
Target:  5'- -cGGGCCaguccGCGGCGCGcacggcguuGACGAcGAUGa -3'
miRNA:   3'- acUCCGG-----CGCCGUGUu--------UUGCUuUUAC- -5'
5200 5' -49.6 NC_001798.1 + 2297 0.75 0.805919
Target:  5'- cGAGGCCaGCGcGCGCGGGuCGAAcAUGa -3'
miRNA:   3'- aCUCCGG-CGC-CGUGUUUuGCUUuUAC- -5'
5200 5' -49.6 NC_001798.1 + 2513 0.74 0.85008
Target:  5'- cGGcGGCCGCGGCggcggcgucgGCGGGGCGggGGg- -3'
miRNA:   3'- aCU-CCGGCGCCG----------UGUUUUGCuuUUac -5'
5200 5' -49.6 NC_001798.1 + 2681 0.66 0.995655
Target:  5'- gGAGGCgggCGCGGCgaGCGAGucggccgcgGCGAcgGUGu -3'
miRNA:   3'- aCUCCG---GCGCCG--UGUUU---------UGCUuuUAC- -5'
5200 5' -49.6 NC_001798.1 + 3211 0.66 0.997361
Target:  5'- gGAGGCgggCGCGGCGCucAGGCGc----- -3'
miRNA:   3'- aCUCCG---GCGCCGUGu-UUUGCuuuuac -5'
5200 5' -49.6 NC_001798.1 + 3319 0.66 0.997788
Target:  5'- cGGGGCgGCGGCgGCG--GCGGGc--- -3'
miRNA:   3'- aCUCCGgCGCCG-UGUuuUGCUUuuac -5'
5200 5' -49.6 NC_001798.1 + 3997 0.66 0.996869
Target:  5'- cGGGGCCGCccGGCcguGAAGCGGcccGUGg -3'
miRNA:   3'- aCUCCGGCG--CCGug-UUUUGCUuu-UAC- -5'
5200 5' -49.6 NC_001798.1 + 4205 0.67 0.994917
Target:  5'- cGuGGuCUGCGGCGCu-GGCGggGGc- -3'
miRNA:   3'- aCuCC-GGCGCCGUGuuUUGCuuUUac -5'
5200 5' -49.6 NC_001798.1 + 4420 0.69 0.970019
Target:  5'- gGGGGUCGCGGCgACAGGcUGGccAUGg -3'
miRNA:   3'- aCUCCGGCGCCG-UGUUUuGCUuuUAC- -5'
5200 5' -49.6 NC_001798.1 + 4578 0.72 0.915337
Target:  5'- gGGGGuCCGCGGCGgAGAagGCGAGc--- -3'
miRNA:   3'- aCUCC-GGCGCCGUgUUU--UGCUUuuac -5'
5200 5' -49.6 NC_001798.1 + 5249 0.73 0.866274
Target:  5'- cGGGGCgCGCGGgGCGGGGgGAAAGg- -3'
miRNA:   3'- aCUCCG-GCGCCgUGUUUUgCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 5641 0.66 0.997788
Target:  5'- cGGGGCCGCagGGUAaaaGAAGUGAGAAc- -3'
miRNA:   3'- aCUCCGGCG--CCGUg--UUUUGCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 5779 0.66 0.997788
Target:  5'- cGGGGCCGCagGGUAaaaGAAGUGAGAAc- -3'
miRNA:   3'- aCUCCGGCG--CCGUg--UUUUGCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 6393 0.69 0.972983
Target:  5'- gGGGGCCGgGGgGCcgggGGGACGggGGg- -3'
miRNA:   3'- aCUCCGGCgCCgUG----UUUUGCuuUUac -5'
5200 5' -49.6 NC_001798.1 + 8550 0.69 0.9806
Target:  5'- -uGGGUCGCGGCGaggggugGGGGCGAAGAa- -3'
miRNA:   3'- acUCCGGCGCCGUg------UUUUGCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 8801 0.78 0.652587
Target:  5'- cGAGGCCGCGGggUAAAGCGGc---- -3'
miRNA:   3'- aCUCCGGCGCCguGUUUUGCUuuuac -5'
5200 5' -49.6 NC_001798.1 + 9660 0.73 0.881538
Target:  5'- -cGGGCCGCGcGCGgAGGGCGcGGGAUGg -3'
miRNA:   3'- acUCCGGCGC-CGUgUUUUGC-UUUUAC- -5'
5200 5' -49.6 NC_001798.1 + 11231 0.66 0.996869
Target:  5'- gGGGGCCGUcgGGC-CAcuGCGggGc-- -3'
miRNA:   3'- aCUCCGGCG--CCGuGUuuUGCuuUuac -5'
5200 5' -49.6 NC_001798.1 + 12257 0.66 0.996869
Target:  5'- gUGGGGCCGCGG-ACGAccaGGCc--GGUGg -3'
miRNA:   3'- -ACUCCGGCGCCgUGUU---UUGcuuUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.