miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5200 5' -49.6 NC_001798.1 + 88687 1.1 0.009213
Target:  5'- gUGAGGCCGCGGCACAAAACGAAAAUGg -3'
miRNA:   3'- -ACUCCGGCGCCGUGUUUUGCUUUUAC- -5'
5200 5' -49.6 NC_001798.1 + 54386 0.87 0.24687
Target:  5'- gGGGGCCGCGGCGCGGucGGCGGGAGc- -3'
miRNA:   3'- aCUCCGGCGCCGUGUU--UUGCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 58790 0.81 0.464474
Target:  5'- aGGGGCCGCGGgGCGAGGaggaaaaGggGAUGg -3'
miRNA:   3'- aCUCCGGCGCCgUGUUUUg------CuuUUAC- -5'
5200 5' -49.6 NC_001798.1 + 27181 0.79 0.566852
Target:  5'- cGGGGCCGCgGGCGCGGGGgGAGGGg- -3'
miRNA:   3'- aCUCCGGCG-CCGUGUUUUgCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 150473 0.79 0.598844
Target:  5'- gGGGGCgCGCGGCGCGccccGACGAcuGUGg -3'
miRNA:   3'- aCUCCG-GCGCCGUGUu---UUGCUuuUAC- -5'
5200 5' -49.6 NC_001798.1 + 8801 0.78 0.652587
Target:  5'- cGAGGCCGCGGggUAAAGCGGc---- -3'
miRNA:   3'- aCUCCGGCGCCguGUUUUGCUuuuac -5'
5200 5' -49.6 NC_001798.1 + 36442 0.78 0.652587
Target:  5'- cGGGGUCGCGGCGgGGAAgGAAGGa- -3'
miRNA:   3'- aCUCCGGCGCCGUgUUUUgCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 134079 0.77 0.705868
Target:  5'- gGAGGCgCGCGcGCGCuucGCGGAGGUGu -3'
miRNA:   3'- aCUCCG-GCGC-CGUGuuuUGCUUUUAC- -5'
5200 5' -49.6 NC_001798.1 + 41616 0.77 0.705868
Target:  5'- cGAGGCCGUaGGC-CGuuAUGAAGAUGa -3'
miRNA:   3'- aCUCCGGCG-CCGuGUuuUGCUUUUAC- -5'
5200 5' -49.6 NC_001798.1 + 74398 0.76 0.726771
Target:  5'- gGGGGCCGUGGCGCc-GGCGGAccUGa -3'
miRNA:   3'- aCUCCGGCGCCGUGuuUUGCUUuuAC- -5'
5200 5' -49.6 NC_001798.1 + 51091 0.76 0.726771
Target:  5'- cGAGGCCGCGGgGgAgauggcGAGCGAAGAg- -3'
miRNA:   3'- aCUCCGGCGCCgUgU------UUUGCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 45275 0.76 0.747313
Target:  5'- gGGGGCCGCGG-ACAAGucgGCGGAcGUGc -3'
miRNA:   3'- aCUCCGGCGCCgUGUUU---UGCUUuUAC- -5'
5200 5' -49.6 NC_001798.1 + 111830 0.76 0.767408
Target:  5'- aGGGGCU--GGCGCGGGGCGGGAAUGc -3'
miRNA:   3'- aCUCCGGcgCCGUGUUUUGCUUUUAC- -5'
5200 5' -49.6 NC_001798.1 + 42176 0.76 0.767408
Target:  5'- cGGGGCCGCGGaaaACAuGGGCGggGcGUGa -3'
miRNA:   3'- aCUCCGGCGCCg--UGU-UUUGCuuU-UAC- -5'
5200 5' -49.6 NC_001798.1 + 150422 0.75 0.777261
Target:  5'- gGGcGGCgGCGGCGCGGGGCGGAc--- -3'
miRNA:   3'- aCU-CCGgCGCCGUGUUUUGCUUuuac -5'
5200 5' -49.6 NC_001798.1 + 102657 0.75 0.786971
Target:  5'- aGGGGCCGgGGCGCccgaugccGAAACGggGu-- -3'
miRNA:   3'- aCUCCGGCgCCGUG--------UUUUGCuuUuac -5'
5200 5' -49.6 NC_001798.1 + 126095 0.75 0.796527
Target:  5'- aGAGGCCGCGGCGaac-GCGucucuGUGg -3'
miRNA:   3'- aCUCCGGCGCCGUguuuUGCuuu--UAC- -5'
5200 5' -49.6 NC_001798.1 + 150569 0.75 0.796527
Target:  5'- cGGGGcCCGCGGgGCGGcGCGGAGAc- -3'
miRNA:   3'- aCUCC-GGCGCCgUGUUuUGCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 154315 0.75 0.805919
Target:  5'- aGGGGCgGCGGCA--GGACGggGAc- -3'
miRNA:   3'- aCUCCGgCGCCGUguUUUGCuuUUac -5'
5200 5' -49.6 NC_001798.1 + 2297 0.75 0.805919
Target:  5'- cGAGGCCaGCGcGCGCGGGuCGAAcAUGa -3'
miRNA:   3'- aCUCCGG-CGC-CGUGUUUuGCUUuUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.