miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5200 5' -49.6 NC_001798.1 + 2297 0.75 0.805919
Target:  5'- cGAGGCCaGCGcGCGCGGGuCGAAcAUGa -3'
miRNA:   3'- aCUCCGG-CGC-CGUGUUUuGCUUuUAC- -5'
5200 5' -49.6 NC_001798.1 + 78123 0.74 0.824171
Target:  5'- cGAGGCCGUggGGCGCcuGGCGGAc--- -3'
miRNA:   3'- aCUCCGGCG--CCGUGuuUUGCUUuuac -5'
5200 5' -49.6 NC_001798.1 + 97475 0.74 0.824171
Target:  5'- gGGGGCCgGCGGCGCGAc-CGggGGg- -3'
miRNA:   3'- aCUCCGG-CGCCGUGUUuuGCuuUUac -5'
5200 5' -49.6 NC_001798.1 + 2513 0.74 0.85008
Target:  5'- cGGcGGCCGCGGCggcggcgucgGCGGGGCGggGGg- -3'
miRNA:   3'- aCU-CCGGCGCCG----------UGUUUUGCuuUUac -5'
5200 5' -49.6 NC_001798.1 + 113129 0.73 0.866274
Target:  5'- cGAGGCCGCguguGGCGgGgaGGACGGAGAa- -3'
miRNA:   3'- aCUCCGGCG----CCGUgU--UUUGCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 5249 0.73 0.866274
Target:  5'- cGGGGCgCGCGGgGCGGGGgGAAAGg- -3'
miRNA:   3'- aCUCCG-GCGCCgUGUUUUgCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 17985 0.73 0.874026
Target:  5'- gGGGGCugCGCGGCcCGGAACagGAGGAUGg -3'
miRNA:   3'- aCUCCG--GCGCCGuGUUUUG--CUUUUAC- -5'
5200 5' -49.6 NC_001798.1 + 139937 0.73 0.874026
Target:  5'- -cGGGCCcugGCGGCGCAcggGGGCGAAGAc- -3'
miRNA:   3'- acUCCGG---CGCCGUGU---UUUGCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 22789 0.73 0.881538
Target:  5'- -cGGGCCGCGGCG-GAGACGAc---- -3'
miRNA:   3'- acUCCGGCGCCGUgUUUUGCUuuuac -5'
5200 5' -49.6 NC_001798.1 + 9660 0.73 0.881538
Target:  5'- -cGGGCCGCGcGCGgAGGGCGcGGGAUGg -3'
miRNA:   3'- acUCCGGCGC-CGUgUUUUGC-UUUUAC- -5'
5200 5' -49.6 NC_001798.1 + 45191 0.73 0.881538
Target:  5'- cGGGGCCguuGCGGCGCAucgGGAC-AAGAUGc -3'
miRNA:   3'- aCUCCGG---CGCCGUGU---UUUGcUUUUAC- -5'
5200 5' -49.6 NC_001798.1 + 121697 0.73 0.888806
Target:  5'- gGGGGCCGCGGCucccgccgcCGcGACGGAGGc- -3'
miRNA:   3'- aCUCCGGCGCCGu--------GUuUUGCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 77652 0.72 0.895823
Target:  5'- uUGAGGCCGCcgucGC-CGAccugacGGCGAAGAUGg -3'
miRNA:   3'- -ACUCCGGCGc---CGuGUU------UUGCUUUUAC- -5'
5200 5' -49.6 NC_001798.1 + 30889 0.72 0.895823
Target:  5'- cGuGGCC-CGGCACGGacGACGAGGAc- -3'
miRNA:   3'- aCuCCGGcGCCGUGUU--UUGCUUUUac -5'
5200 5' -49.6 NC_001798.1 + 146595 0.72 0.909092
Target:  5'- -cGGGCCGCGGCGCc-AGCGGc---- -3'
miRNA:   3'- acUCCGGCGCCGUGuuUUGCUuuuac -5'
5200 5' -49.6 NC_001798.1 + 30374 0.72 0.909092
Target:  5'- cGAGGCgGgCaGCACGGAcACGGAGAUGu -3'
miRNA:   3'- aCUCCGgC-GcCGUGUUU-UGCUUUUAC- -5'
5200 5' -49.6 NC_001798.1 + 26518 0.72 0.915337
Target:  5'- --uGGCCGCGGCgggcgGCGGcgUGGAGGUGg -3'
miRNA:   3'- acuCCGGCGCCG-----UGUUuuGCUUUUAC- -5'
5200 5' -49.6 NC_001798.1 + 4578 0.72 0.915337
Target:  5'- gGGGGuCCGCGGCGgAGAagGCGAGc--- -3'
miRNA:   3'- aCUCC-GGCGCCGUgUUU--UGCUUuuac -5'
5200 5' -49.6 NC_001798.1 + 135796 0.72 0.92132
Target:  5'- gGAGGCCGUGuGCGCGGccCGggGcgucAUGg -3'
miRNA:   3'- aCUCCGGCGC-CGUGUUuuGCuuU----UAC- -5'
5200 5' -49.6 NC_001798.1 + 68114 0.72 0.92132
Target:  5'- cGGGGCCGCgcacGGC-CAAGACGgcGAg- -3'
miRNA:   3'- aCUCCGGCG----CCGuGUUUUGCuuUUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.