miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5204 3' -53.9 NC_001798.1 + 109368 0.66 0.951496
Target:  5'- gGCCGcCCGGGGaGCAGcgggcUGCgcggCCGACUc -3'
miRNA:   3'- -CGGC-GGUUCCaCGUC-----AUGa---GGUUGAu -5'
5204 3' -53.9 NC_001798.1 + 122434 0.66 0.9378
Target:  5'- uGCCGCCGAGcGcGUcGUGCgcccccaCCAGCUGu -3'
miRNA:   3'- -CGGCGGUUC-CaCGuCAUGa------GGUUGAU- -5'
5204 3' -53.9 NC_001798.1 + 9168 0.66 0.9378
Target:  5'- -gCGCCGGGGgGCAGgguCUCUGGCg- -3'
miRNA:   3'- cgGCGGUUCCaCGUCau-GAGGUUGau -5'
5204 3' -53.9 NC_001798.1 + 24430 0.66 0.932736
Target:  5'- gGCCGaCGAGcGcGCGGUGCccgCCGGCUAc -3'
miRNA:   3'- -CGGCgGUUC-CaCGUCAUGa--GGUUGAU- -5'
5204 3' -53.9 NC_001798.1 + 53417 0.67 0.929577
Target:  5'- gGCCGCCAagcaggcgcucggcgAGGUGgAGcugucggGCggCCAGCUGa -3'
miRNA:   3'- -CGGCGGU---------------UCCACgUCa------UGa-GGUUGAU- -5'
5204 3' -53.9 NC_001798.1 + 39695 0.67 0.92742
Target:  5'- cGCCGCCcgccucGGGGaUGCGGUGCcuuggUCGACg- -3'
miRNA:   3'- -CGGCGG------UUCC-ACGUCAUGa----GGUUGau -5'
5204 3' -53.9 NC_001798.1 + 53648 0.67 0.921851
Target:  5'- cGCCGCCGcgguggcgGGGUugcgcgacGCGGcccacagGCUCCAGCa- -3'
miRNA:   3'- -CGGCGGU--------UCCA--------CGUCa------UGAGGUUGau -5'
5204 3' -53.9 NC_001798.1 + 102280 0.67 0.909959
Target:  5'- gGCuCGUCAcGGccGCAGUcguACUCCGGCUGc -3'
miRNA:   3'- -CG-GCGGUuCCa-CGUCA---UGAGGUUGAU- -5'
5204 3' -53.9 NC_001798.1 + 54703 0.67 0.902992
Target:  5'- gGCCGCCGGGGUcuacgacGCGGUGCggaCCu---- -3'
miRNA:   3'- -CGGCGGUUCCA-------CGUCAUGa--GGuugau -5'
5204 3' -53.9 NC_001798.1 + 90388 0.68 0.890259
Target:  5'- cGCCGUCGGGGggcGCGGUugggCCGGCg- -3'
miRNA:   3'- -CGGCGGUUCCa--CGUCAuga-GGUUGau -5'
5204 3' -53.9 NC_001798.1 + 67560 0.68 0.875922
Target:  5'- cGCCGCCAGGGgggGCGac-CUCgGGCUc -3'
miRNA:   3'- -CGGCGGUUCCa--CGUcauGAGgUUGAu -5'
5204 3' -53.9 NC_001798.1 + 74288 0.68 0.875922
Target:  5'- aUCGCCAAGGUGCGGgcggGCgaCGugUAc -3'
miRNA:   3'- cGGCGGUUCCACGUCa---UGagGUugAU- -5'
5204 3' -53.9 NC_001798.1 + 130010 0.69 0.852708
Target:  5'- aUCGCCGAacGGUGCuGUACaCCGGCUc -3'
miRNA:   3'- cGGCGGUU--CCACGuCAUGaGGUUGAu -5'
5204 3' -53.9 NC_001798.1 + 112053 0.69 0.831048
Target:  5'- uUCGCagCGAGGUGCAGUAUucggccaggcauucgUCCAGCa- -3'
miRNA:   3'- cGGCG--GUUCCACGUCAUG---------------AGGUUGau -5'
5204 3' -53.9 NC_001798.1 + 107366 0.69 0.827598
Target:  5'- cUCGCCAAcacGGUGCGGUACcUgCAGCg- -3'
miRNA:   3'- cGGCGGUU---CCACGUCAUG-AgGUUGau -5'
5204 3' -53.9 NC_001798.1 + 141076 0.69 0.827598
Target:  5'- gGCCGCCuAGGGgagcugacgGCAGaACUCCugucGCUAc -3'
miRNA:   3'- -CGGCGG-UUCCa--------CGUCaUGAGGu---UGAU- -5'
5204 3' -53.9 NC_001798.1 + 98335 0.69 0.827598
Target:  5'- cCCGCCGGGcGUGUAccucacGUacaACUCCGACUGu -3'
miRNA:   3'- cGGCGGUUC-CACGU------CA---UGAGGUUGAU- -5'
5204 3' -53.9 NC_001798.1 + 108772 0.69 0.818842
Target:  5'- gGCCGCCAGGGccUGCuacggACUCCGGg-- -3'
miRNA:   3'- -CGGCGGUUCC--ACGuca--UGAGGUUgau -5'
5204 3' -53.9 NC_001798.1 + 120344 0.7 0.800802
Target:  5'- cGCC-CCGGGGUGCAGcg--CCAGCa- -3'
miRNA:   3'- -CGGcGGUUCCACGUCaugaGGUUGau -5'
5204 3' -53.9 NC_001798.1 + 27931 0.7 0.79526
Target:  5'- cGCCGCCGGGGUcccggcgccggccgcGCcccGGcGCUCCAGCc- -3'
miRNA:   3'- -CGGCGGUUCCA---------------CG---UCaUGAGGUUGau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.