Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5204 | 3' | -53.9 | NC_001798.1 | + | 39695 | 0.67 | 0.92742 |
Target: 5'- cGCCGCCcgccucGGGGaUGCGGUGCcuuggUCGACg- -3' miRNA: 3'- -CGGCGG------UUCC-ACGUCAUGa----GGUUGau -5' |
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5204 | 3' | -53.9 | NC_001798.1 | + | 53417 | 0.67 | 0.929577 |
Target: 5'- gGCCGCCAagcaggcgcucggcgAGGUGgAGcugucggGCggCCAGCUGa -3' miRNA: 3'- -CGGCGGU---------------UCCACgUCa------UGa-GGUUGAU- -5' |
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5204 | 3' | -53.9 | NC_001798.1 | + | 24430 | 0.66 | 0.932736 |
Target: 5'- gGCCGaCGAGcGcGCGGUGCccgCCGGCUAc -3' miRNA: 3'- -CGGCgGUUC-CaCGUCAUGa--GGUUGAU- -5' |
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5204 | 3' | -53.9 | NC_001798.1 | + | 9168 | 0.66 | 0.9378 |
Target: 5'- -gCGCCGGGGgGCAGgguCUCUGGCg- -3' miRNA: 3'- cgGCGGUUCCaCGUCau-GAGGUUGau -5' |
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5204 | 3' | -53.9 | NC_001798.1 | + | 122434 | 0.66 | 0.9378 |
Target: 5'- uGCCGCCGAGcGcGUcGUGCgcccccaCCAGCUGu -3' miRNA: 3'- -CGGCGGUUC-CaCGuCAUGa------GGUUGAU- -5' |
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5204 | 3' | -53.9 | NC_001798.1 | + | 109368 | 0.66 | 0.951496 |
Target: 5'- gGCCGcCCGGGGaGCAGcgggcUGCgcggCCGACUc -3' miRNA: 3'- -CGGC-GGUUCCaCGUC-----AUGa---GGUUGAu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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