Results 41 - 60 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5204 | 5' | -60.5 | NC_001798.1 | + | 72240 | 0.68 | 0.598308 |
Target: 5'- aGCAG-CUGCGGCCCGcGGUCCa---- -3' miRNA: 3'- gCGUCaGGCGUUGGGC-CCGGGaguag -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 1993 | 0.68 | 0.595339 |
Target: 5'- gCGCGGUCCaguugcccgcccagGCGGCCguggCGGGCCCgCAg- -3' miRNA: 3'- -GCGUCAGG--------------CGUUGG----GCCCGGGaGUag -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 35450 | 0.68 | 0.588419 |
Target: 5'- cCGCuGgcgCCGCGGCCCGucugcuGGCCCgcggccCGUCu -3' miRNA: 3'- -GCGuCa--GGCGUUGGGC------CCGGGa-----GUAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 23796 | 0.68 | 0.568735 |
Target: 5'- aGCGGggagCCGUGGCCCGGGgCCg---- -3' miRNA: 3'- gCGUCa---GGCGUUGGGCCCgGGaguag -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 79398 | 0.68 | 0.568735 |
Target: 5'- gCGgAGUCCGC-GCCCGcGCCCcugcUCGUUg -3' miRNA: 3'- -GCgUCAGGCGuUGGGCcCGGG----AGUAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 35602 | 0.68 | 0.568735 |
Target: 5'- cCGCGGgcuccgggggcUCCGCAcucuGCCCGGcucGCCC-CGUCc -3' miRNA: 3'- -GCGUC-----------AGGCGU----UGGGCC---CGGGaGUAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 131332 | 0.68 | 0.568735 |
Target: 5'- aCGCcGcCCGCGcCCCGGGCgCgaCGUCg -3' miRNA: 3'- -GCGuCaGGCGUuGGGCCCG-GgaGUAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 48379 | 0.69 | 0.558953 |
Target: 5'- cCGCGGggcgugccgCCGCGACCgcaCGGGCCCcCGc- -3' miRNA: 3'- -GCGUCa--------GGCGUUGG---GCCCGGGaGUag -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 32030 | 0.69 | 0.558953 |
Target: 5'- gGCGa-CCGCGGCCaCGGGCCgCUCGc- -3' miRNA: 3'- gCGUcaGGCGUUGG-GCCCGG-GAGUag -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 51281 | 0.69 | 0.54922 |
Target: 5'- aCGCGGgccCCGCGgggaggcuACCUGGGCCCg---- -3' miRNA: 3'- -GCGUCa--GGCGU--------UGGGCCCGGGaguag -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 135799 | 0.69 | 0.54922 |
Target: 5'- gGCcguGUgCGCGGCCCGGGgCgUCAUg -3' miRNA: 3'- gCGu--CAgGCGUUGGGCCCgGgAGUAg -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 78571 | 0.69 | 0.529917 |
Target: 5'- gCGCuGgCCGCGcgcgaGCgCCGGGCCCagAUCg -3' miRNA: 3'- -GCGuCaGGCGU-----UG-GGCCCGGGagUAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 3255 | 0.69 | 0.520359 |
Target: 5'- cCGCGGcgCCGUAGCCggCGGGCaccgcgcgCUCGUCg -3' miRNA: 3'- -GCGUCa-GGCGUUGG--GCCCGg-------GAGUAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 43132 | 0.7 | 0.501452 |
Target: 5'- gCGCGcGUcCCGCGucACgCGGGCCCagUCGUCc -3' miRNA: 3'- -GCGU-CA-GGCGU--UGgGCCCGGG--AGUAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 10710 | 0.7 | 0.501452 |
Target: 5'- cCGCAGgcauccagggguUCCGCGGCCCacaguaguuuguGGGCCCgggugCGUUc -3' miRNA: 3'- -GCGUC------------AGGCGUUGGG------------CCCGGGa----GUAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 4879 | 0.7 | 0.498641 |
Target: 5'- gGCGGUCCGUcggcuggauccggaGAUCCGGGgCCgccggUCGUCu -3' miRNA: 3'- gCGUCAGGCG--------------UUGGGCCCgGG-----AGUAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 153286 | 0.7 | 0.492112 |
Target: 5'- cCGCgGGUCCGCcgucuucgugGGCCCGGGCUCgggC-UCg -3' miRNA: 3'- -GCG-UCAGGCG----------UUGGGCCCGGGa--GuAG- -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 15137 | 0.7 | 0.492112 |
Target: 5'- gGgGGUUCGCcgucCCCGGcGCCCUCAa- -3' miRNA: 3'- gCgUCAGGCGuu--GGGCC-CGGGAGUag -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 38890 | 0.7 | 0.482852 |
Target: 5'- -cCAGcCCGCAcagGCCuCGGGCCUUCAg- -3' miRNA: 3'- gcGUCaGGCGU---UGG-GCCCGGGAGUag -5' |
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5204 | 5' | -60.5 | NC_001798.1 | + | 154278 | 0.7 | 0.482852 |
Target: 5'- gGC-GUgCGCAGCCCGGGCCgUguUg -3' miRNA: 3'- gCGuCAgGCGUUGGGCCCGGgAguAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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