miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5204 5' -60.5 NC_001798.1 + 28803 0.75 0.236826
Target:  5'- gCGCGGguccUCCGCcGCCgCGGGCCCgggcCGUCg -3'
miRNA:   3'- -GCGUC----AGGCGuUGG-GCCCGGGa---GUAG- -5'
5204 5' -60.5 NC_001798.1 + 31996 0.66 0.73594
Target:  5'- gGCGGcgCCGCG--CCGGGCCC-CGg- -3'
miRNA:   3'- gCGUCa-GGCGUugGGCCCGGGaGUag -5'
5204 5' -60.5 NC_001798.1 + 32030 0.69 0.558953
Target:  5'- gGCGa-CCGCGGCCaCGGGCCgCUCGc- -3'
miRNA:   3'- gCGUcaGGCGUUGG-GCCCGG-GAGUag -5'
5204 5' -60.5 NC_001798.1 + 32379 0.73 0.318909
Target:  5'- cCGgGGcCCGCGACCCGGcGCCCggCcUCa -3'
miRNA:   3'- -GCgUCaGGCGUUGGGCC-CGGGa-GuAG- -5'
5204 5' -60.5 NC_001798.1 + 34800 0.7 0.473678
Target:  5'- gCGCGGcCCGgGGCCCcgGGGCCC-CcgCg -3'
miRNA:   3'- -GCGUCaGGCgUUGGG--CCCGGGaGuaG- -5'
5204 5' -60.5 NC_001798.1 + 35279 0.66 0.707083
Target:  5'- aCGCGGg-CGgGGCUCGGGCUCUCc-- -3'
miRNA:   3'- -GCGUCagGCgUUGGGCCCGGGAGuag -5'
5204 5' -60.5 NC_001798.1 + 35450 0.68 0.588419
Target:  5'- cCGCuGgcgCCGCGGCCCGucugcuGGCCCgcggccCGUCu -3'
miRNA:   3'- -GCGuCa--GGCGUUGGGC------CCGGGa-----GUAG- -5'
5204 5' -60.5 NC_001798.1 + 35602 0.68 0.568735
Target:  5'- cCGCGGgcuccgggggcUCCGCAcucuGCCCGGcucGCCC-CGUCc -3'
miRNA:   3'- -GCGUC-----------AGGCGU----UGGGCC---CGGGaGUAG- -5'
5204 5' -60.5 NC_001798.1 + 36319 0.66 0.716773
Target:  5'- gCGCGGgCCGgGGCCgGGGCUcgCUgGUCc -3'
miRNA:   3'- -GCGUCaGGCgUUGGgCCCGG--GAgUAG- -5'
5204 5' -60.5 NC_001798.1 + 38890 0.7 0.482852
Target:  5'- -cCAGcCCGCAcagGCCuCGGGCCUUCAg- -3'
miRNA:   3'- gcGUCaGGCGU---UGG-GCCCGGGAGUag -5'
5204 5' -60.5 NC_001798.1 + 39092 0.67 0.677687
Target:  5'- aCGCAGUCgCGCAugGCCUuGGCUgUCGa- -3'
miRNA:   3'- -GCGUCAG-GCGU--UGGGcCCGGgAGUag -5'
5204 5' -60.5 NC_001798.1 + 43132 0.7 0.501452
Target:  5'- gCGCGcGUcCCGCGucACgCGGGCCCagUCGUCc -3'
miRNA:   3'- -GCGU-CA-GGCGU--UGgGCCCGGG--AGUAG- -5'
5204 5' -60.5 NC_001798.1 + 46897 0.67 0.636046
Target:  5'- uGCuGUCCGUuggacaaggaucGCCCuGGGCCCccacugacUCAUCg -3'
miRNA:   3'- gCGuCAGGCGu-----------UGGG-CCCGGG--------AGUAG- -5'
5204 5' -60.5 NC_001798.1 + 47380 0.66 0.710967
Target:  5'- cCGCAGggagccacucCCGCGGCCCccguggguuacgcaGGCCCUCGc- -3'
miRNA:   3'- -GCGUCa---------GGCGUUGGGc-------------CCGGGAGUag -5'
5204 5' -60.5 NC_001798.1 + 48379 0.69 0.558953
Target:  5'- cCGCGGggcgugccgCCGCGACCgcaCGGGCCCcCGc- -3'
miRNA:   3'- -GCGUCa--------GGCGUUGG---GCCCGGGaGUag -5'
5204 5' -60.5 NC_001798.1 + 51169 0.67 0.632069
Target:  5'- aCGCGcGUCCGaGGCCCGGGCggcggcgcccccccgCCgggCGUCc -3'
miRNA:   3'- -GCGU-CAGGCgUUGGGCCCG---------------GGa--GUAG- -5'
5204 5' -60.5 NC_001798.1 + 51281 0.69 0.54922
Target:  5'- aCGCGGgccCCGCGgggaggcuACCUGGGCCCg---- -3'
miRNA:   3'- -GCGUCa--GGCGU--------UGGGCCCGGGaguag -5'
5204 5' -60.5 NC_001798.1 + 51471 0.73 0.333284
Target:  5'- uCGCGGgCCGCGugUCGGGCCCg---- -3'
miRNA:   3'- -GCGUCaGGCGUugGGCCCGGGaguag -5'
5204 5' -60.5 NC_001798.1 + 52864 0.66 0.697333
Target:  5'- aGCgAGUCCGUgcuggGGCCgCGGGUCCgcgCGUg -3'
miRNA:   3'- gCG-UCAGGCG-----UUGG-GCCCGGGa--GUAg -5'
5204 5' -60.5 NC_001798.1 + 58099 0.74 0.298227
Target:  5'- cCGCAGggUCGCGgccGCCCaGGGCCCggCGUCu -3'
miRNA:   3'- -GCGUCa-GGCGU---UGGG-CCCGGGa-GUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.