miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5204 5' -60.5 NC_001798.1 + 1993 0.68 0.595339
Target:  5'- gCGCGGUCCaguugcccgcccagGCGGCCguggCGGGCCCgCAg- -3'
miRNA:   3'- -GCGUCAGG--------------CGUUGG----GCCCGGGaGUag -5'
5204 5' -60.5 NC_001798.1 + 2115 0.71 0.412102
Target:  5'- gCGCGGcCCGCGGCCa-GGUCCUCGc- -3'
miRNA:   3'- -GCGUCaGGCGUUGGgcCCGGGAGUag -5'
5204 5' -60.5 NC_001798.1 + 2449 0.66 0.726395
Target:  5'- gGCGGcgCCaGCcGCCCugcgggucgGGGCCCUCGg- -3'
miRNA:   3'- gCGUCa-GG-CGuUGGG---------CCCGGGAGUag -5'
5204 5' -60.5 NC_001798.1 + 2795 0.71 0.429195
Target:  5'- gCGCGGgcUCCGCGGCagcgCCGGGCCCa---- -3'
miRNA:   3'- -GCGUC--AGGCGUUG----GGCCCGGGaguag -5'
5204 5' -60.5 NC_001798.1 + 3255 0.69 0.520359
Target:  5'- cCGCGGcgCCGUAGCCggCGGGCaccgcgcgCUCGUCg -3'
miRNA:   3'- -GCGUCa-GGCGUUGG--GCCCGg-------GAGUAG- -5'
5204 5' -60.5 NC_001798.1 + 4131 0.68 0.618152
Target:  5'- cCGgGGcgCCGCccCCgGGGCCCUCGc- -3'
miRNA:   3'- -GCgUCa-GGCGuuGGgCCCGGGAGUag -5'
5204 5' -60.5 NC_001798.1 + 4484 0.71 0.403714
Target:  5'- -cCGGUCCGCgGACCCaGcGGCCCgCGUCg -3'
miRNA:   3'- gcGUCAGGCG-UUGGG-C-CCGGGaGUAG- -5'
5204 5' -60.5 NC_001798.1 + 4711 0.66 0.710967
Target:  5'- aCGCcGUCCGCGgcaggcucgucgacgGCCUccccggacgccgGGGCCgcCUCGUCg -3'
miRNA:   3'- -GCGuCAGGCGU---------------UGGG------------CCCGG--GAGUAG- -5'
5204 5' -60.5 NC_001798.1 + 4879 0.7 0.498641
Target:  5'- gGCGGUCCGUcggcuggauccggaGAUCCGGGgCCgccggUCGUCu -3'
miRNA:   3'- gCGUCAGGCG--------------UUGGGCCCgGG-----AGUAG- -5'
5204 5' -60.5 NC_001798.1 + 7495 0.73 0.343627
Target:  5'- aGCccGGUCCccuacgccccccucgGCAGCCCGGacCCCUCAUCg -3'
miRNA:   3'- gCG--UCAGG---------------CGUUGGGCCc-GGGAGUAG- -5'
5204 5' -60.5 NC_001798.1 + 7589 0.71 0.403714
Target:  5'- cCGC-GUCCGacACCCGGGCCC-CAa- -3'
miRNA:   3'- -GCGuCAGGCguUGGGCCCGGGaGUag -5'
5204 5' -60.5 NC_001798.1 + 7709 0.66 0.73594
Target:  5'- uGCuGcCCGCGGaccaCCGGGCCUUUuuUCg -3'
miRNA:   3'- gCGuCaGGCGUUg---GGCCCGGGAGu-AG- -5'
5204 5' -60.5 NC_001798.1 + 10488 0.68 0.618152
Target:  5'- cCGCuGUCCGUcuCCaGGGCCC-CGUa -3'
miRNA:   3'- -GCGuCAGGCGuuGGgCCCGGGaGUAg -5'
5204 5' -60.5 NC_001798.1 + 10710 0.7 0.501452
Target:  5'- cCGCAGgcauccagggguUCCGCGGCCCacaguaguuuguGGGCCCgggugCGUUc -3'
miRNA:   3'- -GCGUC------------AGGCGUUGGG------------CCCGGGa----GUAG- -5'
5204 5' -60.5 NC_001798.1 + 12129 0.67 0.667807
Target:  5'- aGUAGUuuGUauggggGACCUGGGCCCcCAc- -3'
miRNA:   3'- gCGUCAggCG------UUGGGCCCGGGaGUag -5'
5204 5' -60.5 NC_001798.1 + 15137 0.7 0.492112
Target:  5'- gGgGGUUCGCcgucCCCGGcGCCCUCAa- -3'
miRNA:   3'- gCgUCAGGCGuu--GGGCC-CGGGAGUag -5'
5204 5' -60.5 NC_001798.1 + 16656 0.71 0.412102
Target:  5'- gGC-GUCCGCGgaACCCaaGGGCCCgggaUCGUCc -3'
miRNA:   3'- gCGuCAGGCGU--UGGG--CCCGGG----AGUAG- -5'
5204 5' -60.5 NC_001798.1 + 23251 0.74 0.298227
Target:  5'- cCGCGGUCCGCGgggcguACCCGGaCCC-CAUg -3'
miRNA:   3'- -GCGUCAGGCGU------UGGGCCcGGGaGUAg -5'
5204 5' -60.5 NC_001798.1 + 23796 0.68 0.568735
Target:  5'- aGCGGggagCCGUGGCCCGGGgCCg---- -3'
miRNA:   3'- gCGUCa---GGCGUUGGGCCCgGGaguag -5'
5204 5' -60.5 NC_001798.1 + 25379 0.66 0.716773
Target:  5'- cCGCg--CCGUGGCgCCcGGCCCUCAUg -3'
miRNA:   3'- -GCGucaGGCGUUG-GGcCCGGGAGUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.