miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5204 5' -60.5 NC_001798.1 + 85771 1.09 0.001031
Target:  5'- gCGCAGUCCGCAACCCGGGCCCUCAUCg -3'
miRNA:   3'- -GCGUCAGGCGUUGGGCCCGGGAGUAG- -5'
5204 5' -60.5 NC_001798.1 + 86650 0.78 0.164885
Target:  5'- gGCgGGUCUGUAuaGCCCugcGGGCCCUCAUCu -3'
miRNA:   3'- gCG-UCAGGCGU--UGGG---CCCGGGAGUAG- -5'
5204 5' -60.5 NC_001798.1 + 147207 0.76 0.215394
Target:  5'- gGCGGUCCG--GCCCGGGCCCcCGg- -3'
miRNA:   3'- gCGUCAGGCguUGGGCCCGGGaGUag -5'
5204 5' -60.5 NC_001798.1 + 28803 0.75 0.236826
Target:  5'- gCGCGGguccUCCGCcGCCgCGGGCCCgggcCGUCg -3'
miRNA:   3'- -GCGUC----AGGCGuUGG-GCCCGGGa---GUAG- -5'
5204 5' -60.5 NC_001798.1 + 124431 0.75 0.266097
Target:  5'- cCGCGGUCgCGCGGgCCGuGGCcagagCCUCAUCg -3'
miRNA:   3'- -GCGUCAG-GCGUUgGGC-CCG-----GGAGUAG- -5'
5204 5' -60.5 NC_001798.1 + 58099 0.74 0.298227
Target:  5'- cCGCAGggUCGCGgccGCCCaGGGCCCggCGUCu -3'
miRNA:   3'- -GCGUCa-GGCGU---UGGG-CCCGGGa-GUAG- -5'
5204 5' -60.5 NC_001798.1 + 23251 0.74 0.298227
Target:  5'- cCGCGGUCCGCGgggcguACCCGGaCCC-CAUg -3'
miRNA:   3'- -GCGUCAGGCGU------UGGGCCcGGGaGUAg -5'
5204 5' -60.5 NC_001798.1 + 32379 0.73 0.318909
Target:  5'- cCGgGGcCCGCGACCCGGcGCCCggCcUCa -3'
miRNA:   3'- -GCgUCaGGCGUUGGGCC-CGGGa-GuAG- -5'
5204 5' -60.5 NC_001798.1 + 51471 0.73 0.333284
Target:  5'- uCGCGGgCCGCGugUCGGGCCCg---- -3'
miRNA:   3'- -GCGUCaGGCGUugGGCCCGGGaguag -5'
5204 5' -60.5 NC_001798.1 + 7495 0.73 0.343627
Target:  5'- aGCccGGUCCccuacgccccccucgGCAGCCCGGacCCCUCAUCg -3'
miRNA:   3'- gCG--UCAGG---------------CGUUGGGCCc-GGGAGUAG- -5'
5204 5' -60.5 NC_001798.1 + 118535 0.72 0.355727
Target:  5'- cCGguGUCuCGCGGCCCGGcGCCaUgAUCa -3'
miRNA:   3'- -GCguCAG-GCGUUGGGCC-CGGgAgUAG- -5'
5204 5' -60.5 NC_001798.1 + 75121 0.72 0.362664
Target:  5'- cCGCAGUCCgggcagggcggcgGCGACgaCGGGCCCgcgagcccgUCGUCg -3'
miRNA:   3'- -GCGUCAGG-------------CGUUGg-GCCCGGG---------AGUAG- -5'
5204 5' -60.5 NC_001798.1 + 87196 0.72 0.371269
Target:  5'- gGCGGcuggccaCCGuCAGCCgCGaGGCCCUCAUCc -3'
miRNA:   3'- gCGUCa------GGC-GUUGG-GC-CCGGGAGUAG- -5'
5204 5' -60.5 NC_001798.1 + 153087 0.72 0.387268
Target:  5'- gGCGGg--GCGGCgCCGGGCCCUCGc- -3'
miRNA:   3'- gCGUCaggCGUUG-GGCCCGGGAGUag -5'
5204 5' -60.5 NC_001798.1 + 4484 0.71 0.403714
Target:  5'- -cCGGUCCGCgGACCCaGcGGCCCgCGUCg -3'
miRNA:   3'- gcGUCAGGCG-UUGGG-C-CCGGGaGUAG- -5'
5204 5' -60.5 NC_001798.1 + 113005 0.71 0.403714
Target:  5'- aGCuugGGUCCG-GACCCGGGCCCgcgCcgCc -3'
miRNA:   3'- gCG---UCAGGCgUUGGGCCCGGGa--GuaG- -5'
5204 5' -60.5 NC_001798.1 + 7589 0.71 0.403714
Target:  5'- cCGC-GUCCGacACCCGGGCCC-CAa- -3'
miRNA:   3'- -GCGuCAGGCguUGGGCCCGGGaGUag -5'
5204 5' -60.5 NC_001798.1 + 2115 0.71 0.412102
Target:  5'- gCGCGGcCCGCGGCCa-GGUCCUCGc- -3'
miRNA:   3'- -GCGUCaGGCGUUGGgcCCGGGAGUag -5'
5204 5' -60.5 NC_001798.1 + 16656 0.71 0.412102
Target:  5'- gGC-GUCCGCGgaACCCaaGGGCCCgggaUCGUCc -3'
miRNA:   3'- gCGuCAGGCGU--UGGG--CCCGGG----AGUAG- -5'
5204 5' -60.5 NC_001798.1 + 2795 0.71 0.429195
Target:  5'- gCGCGGgcUCCGCGGCagcgCCGGGCCCa---- -3'
miRNA:   3'- -GCGUC--AGGCGUUG----GGCCCGGGaguag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.