miRNA display CGI


Results 41 - 60 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5205 5' -63.5 NC_001798.1 + 128296 0.66 0.523565
Target:  5'- -cGCCUGacGCGCCGCGCCCccccguccgccgccGAAGCc -3'
miRNA:   3'- caCGGGCc-CGCGGUGCGGGu-------------CUUCGu -5'
5205 5' -63.5 NC_001798.1 + 14947 0.66 0.51979
Target:  5'- uGUGUUgGGGUGUgGgGCCC-GAGGCAu -3'
miRNA:   3'- -CACGGgCCCGCGgUgCGGGuCUUCGU- -5'
5205 5' -63.5 NC_001798.1 + 32376 0.66 0.51979
Target:  5'- -aGCCCGGG-GCCcgcgacccgGCGCCCGGccucacGCGc -3'
miRNA:   3'- caCGGGCCCgCGG---------UGCGGGUCuu----CGU- -5'
5205 5' -63.5 NC_001798.1 + 106472 0.66 0.51979
Target:  5'- -aGUCUGGGCGgCGCGgCCC-GAGGUc -3'
miRNA:   3'- caCGGGCCCGCgGUGC-GGGuCUUCGu -5'
5205 5' -63.5 NC_001798.1 + 2119 0.66 0.51979
Target:  5'- -gGCCCGcGGCcagguCCuCGCCCGGcAGCGg -3'
miRNA:   3'- caCGGGC-CCGc----GGuGCGGGUCuUCGU- -5'
5205 5' -63.5 NC_001798.1 + 96165 0.66 0.51979
Target:  5'- -cGCCauGGCgGCCGCGCCCccGGccGCGg -3'
miRNA:   3'- caCGGgcCCG-CGGUGCGGG--UCuuCGU- -5'
5205 5' -63.5 NC_001798.1 + 127348 0.66 0.51979
Target:  5'- -aGCCUGGGCGuccccgugacCCGCGuCCCGGGcuaccAGUAc -3'
miRNA:   3'- caCGGGCCCGC----------GGUGC-GGGUCU-----UCGU- -5'
5205 5' -63.5 NC_001798.1 + 27981 0.66 0.51979
Target:  5'- -cGCCCcGGCgcuccagccguGCCGCGCCCcGgcGCGc -3'
miRNA:   3'- caCGGGcCCG-----------CGGUGCGGGuCuuCGU- -5'
5205 5' -63.5 NC_001798.1 + 90995 0.66 0.51979
Target:  5'- -cGCCCcacaGGCGCaagcgaCGCGgCCAGAAGCc -3'
miRNA:   3'- caCGGGc---CCGCG------GUGCgGGUCUUCGu -5'
5205 5' -63.5 NC_001798.1 + 91103 0.66 0.51979
Target:  5'- cGUGgacCCCGGuGCGCUGCuCCgCGGggGCGu -3'
miRNA:   3'- -CAC---GGGCC-CGCGGUGcGG-GUCuuCGU- -5'
5205 5' -63.5 NC_001798.1 + 75995 0.67 0.511337
Target:  5'- -cGcCCCGGGCGCCGgcggcagggccccgUGCCCGcccgcccugggccccGAGGCc -3'
miRNA:   3'- caC-GGGCCCGCGGU--------------GCGGGU---------------CUUCGu -5'
5205 5' -63.5 NC_001798.1 + 18259 0.67 0.510401
Target:  5'- -gGCCCGGGgGCCagguACGCauccuccgCGGggGUAu -3'
miRNA:   3'- caCGGGCCCgCGG----UGCGg-------GUCuuCGU- -5'
5205 5' -63.5 NC_001798.1 + 91636 0.67 0.510401
Target:  5'- -cGCCCGGGUgagcGUgACGUCaaaGGggGCGu -3'
miRNA:   3'- caCGGGCCCG----CGgUGCGGg--UCuuCGU- -5'
5205 5' -63.5 NC_001798.1 + 5372 0.67 0.510401
Target:  5'- -cGCCCGcGCGuCCGCGUCCGu-GGCGg -3'
miRNA:   3'- caCGGGCcCGC-GGUGCGGGUcuUCGU- -5'
5205 5' -63.5 NC_001798.1 + 154048 0.67 0.508532
Target:  5'- -cGCCgGGGCGCggcacggcuggaGCGCCgGGgcGCGg -3'
miRNA:   3'- caCGGgCCCGCGg-----------UGCGGgUCuuCGU- -5'
5205 5' -63.5 NC_001798.1 + 14791 0.67 0.504802
Target:  5'- -cGCUCGGGUgcgcguaucgccugcGCCcCGCCCGGccGCGc -3'
miRNA:   3'- caCGGGCCCG---------------CGGuGCGGGUCuuCGU- -5'
5205 5' -63.5 NC_001798.1 + 151668 0.67 0.501083
Target:  5'- cGUGUCCGuGCuGCC-CGCCuCGGAGGUg -3'
miRNA:   3'- -CACGGGCcCG-CGGuGCGG-GUCUUCGu -5'
5205 5' -63.5 NC_001798.1 + 129342 0.67 0.501083
Target:  5'- -gGCCgCGGaGCGCC-CGCCgGGccuGGCGg -3'
miRNA:   3'- caCGG-GCC-CGCGGuGCGGgUCu--UCGU- -5'
5205 5' -63.5 NC_001798.1 + 122059 0.67 0.501083
Target:  5'- -aGCCCuGGGCGCguCGgaCgCGGAGGCGg -3'
miRNA:   3'- caCGGG-CCCGCGguGCg-G-GUCUUCGU- -5'
5205 5' -63.5 NC_001798.1 + 153054 0.67 0.501083
Target:  5'- uUGgCC-GGCGCCGCcCCCuGggGCGg -3'
miRNA:   3'- cACgGGcCCGCGGUGcGGGuCuuCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.