miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5205 5' -63.5 NC_001798.1 + 85683 1.07 0.000718
Target:  5'- gGUGCCCGGGCGCCACGCCCAGAAGCAa -3'
miRNA:   3'- -CACGGGCCCGCGGUGCGGGUCUUCGU- -5'
5205 5' -63.5 NC_001798.1 + 134980 0.79 0.084815
Target:  5'- cGUGCCUGGGgGCCugGCCCGcGGugGGCGc -3'
miRNA:   3'- -CACGGGCCCgCGGugCGGGU-CU--UCGU- -5'
5205 5' -63.5 NC_001798.1 + 130238 0.77 0.111869
Target:  5'- -aGCCCGGGUcuccgggcggcccGCCACGCCUAGAAccGCGc -3'
miRNA:   3'- caCGGGCCCG-------------CGGUGCGGGUCUU--CGU- -5'
5205 5' -63.5 NC_001798.1 + 128950 0.77 0.117936
Target:  5'- -cGCCCGGGCGCguucCGgGCCCGGAggaGGCGc -3'
miRNA:   3'- caCGGGCCCGCG----GUgCGGGUCU---UCGU- -5'
5205 5' -63.5 NC_001798.1 + 3829 0.76 0.127138
Target:  5'- -cGCCuCGGGCGCC-C-CCCAGAGGCc -3'
miRNA:   3'- caCGG-GCCCGCGGuGcGGGUCUUCGu -5'
5205 5' -63.5 NC_001798.1 + 1479 0.76 0.127138
Target:  5'- -cGCgCCGGGCGCCauggcgucgcccGCGCCC-GAGGCGg -3'
miRNA:   3'- caCG-GGCCCGCGG------------UGCGGGuCUUCGU- -5'
5205 5' -63.5 NC_001798.1 + 3663 0.75 0.158858
Target:  5'- cGUcCCCGGGCGCCACGCgCGGGuucuggAGCc -3'
miRNA:   3'- -CAcGGGCCCGCGGUGCGgGUCU------UCGu -5'
5205 5' -63.5 NC_001798.1 + 3767 0.75 0.160422
Target:  5'- -aGCUCGGGCGCCcacacgggcgccgggGCGCCC-GAGGCc -3'
miRNA:   3'- caCGGGCCCGCGG---------------UGCGGGuCUUCGu -5'
5205 5' -63.5 NC_001798.1 + 135229 0.75 0.166818
Target:  5'- -aGgCCGGGCuGCCGgaaGCCCGGggGCGg -3'
miRNA:   3'- caCgGGCCCG-CGGUg--CGGGUCuuCGU- -5'
5205 5' -63.5 NC_001798.1 + 4129 0.74 0.17093
Target:  5'- -gGCCgGGGCGCCGCcCCCGGGgcccucgcgGGCAc -3'
miRNA:   3'- caCGGgCCCGCGGUGcGGGUCU---------UCGU- -5'
5205 5' -63.5 NC_001798.1 + 102198 0.74 0.179428
Target:  5'- -aGCCUGGcGCGCgGCGCgCCGGGAGUc -3'
miRNA:   3'- caCGGGCC-CGCGgUGCG-GGUCUUCGu -5'
5205 5' -63.5 NC_001798.1 + 10751 0.74 0.179428
Target:  5'- -gGCCCGGGUGCguuccgCGgGCgCCGGAAGCAa -3'
miRNA:   3'- caCGGGCCCGCG------GUgCG-GGUCUUCGU- -5'
5205 5' -63.5 NC_001798.1 + 47680 0.74 0.192877
Target:  5'- -gGCCCGauGCGCgCGCGCCCgAGggGCGa -3'
miRNA:   3'- caCGGGCc-CGCG-GUGCGGG-UCuuCGU- -5'
5205 5' -63.5 NC_001798.1 + 152243 0.74 0.197552
Target:  5'- -cGCUCGGG-GCCGgggucCGCCCGGGAGCu -3'
miRNA:   3'- caCGGGCCCgCGGU-----GCGGGUCUUCGu -5'
5205 5' -63.5 NC_001798.1 + 48365 0.73 0.2072
Target:  5'- -cGCCCGGG-GCCGC-CCCGcGggGCGu -3'
miRNA:   3'- caCGGGCCCgCGGUGcGGGU-CuuCGU- -5'
5205 5' -63.5 NC_001798.1 + 57168 0.73 0.2072
Target:  5'- -cGCCCGGGCcggcGCCcucCGCCCAGAucacguGCGg -3'
miRNA:   3'- caCGGGCCCG----CGGu--GCGGGUCUu-----CGU- -5'
5205 5' -63.5 NC_001798.1 + 23921 0.73 0.212176
Target:  5'- -gGCCuCGGGCGCCccgGCGCCCGuguGGGCGc -3'
miRNA:   3'- caCGG-GCCCGCGG---UGCGGGUc--UUCGU- -5'
5205 5' -63.5 NC_001798.1 + 24445 0.73 0.216741
Target:  5'- gGUGCCCGccggcuacGGCGCCGCgggggugcucgccGCCCuGggGCGc -3'
miRNA:   3'- -CACGGGC--------CCGCGGUG-------------CGGGuCuuCGU- -5'
5205 5' -63.5 NC_001798.1 + 32053 0.73 0.22772
Target:  5'- -cGCCCcggcguccgcGGGCGCCGCGCCCccgucGGCGu -3'
miRNA:   3'- caCGGG----------CCCGCGGUGCGGGucu--UCGU- -5'
5205 5' -63.5 NC_001798.1 + 52037 0.72 0.233112
Target:  5'- -gGCCCgGGGUGCgCGCGCuCCuGggGCGc -3'
miRNA:   3'- caCGGG-CCCGCG-GUGCG-GGuCuuCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.