miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5205 5' -63.5 NC_001798.1 + 1223 0.67 0.491841
Target:  5'- -gGCCCGcGGC-CgACGCCCAGcguaucugcggGGGCGg -3'
miRNA:   3'- caCGGGC-CCGcGgUGCGGGUC-----------UUCGU- -5'
5205 5' -63.5 NC_001798.1 + 1479 0.76 0.127138
Target:  5'- -cGCgCCGGGCGCCauggcgucgcccGCGCCC-GAGGCGg -3'
miRNA:   3'- caCG-GGCCCGCGG------------UGCGGGuCUUCGU- -5'
5205 5' -63.5 NC_001798.1 + 1518 0.68 0.455704
Target:  5'- -gGCCCGGcCGuCCA-GCgCCGGGAGCAc -3'
miRNA:   3'- caCGGGCCcGC-GGUgCG-GGUCUUCGU- -5'
5205 5' -63.5 NC_001798.1 + 2119 0.66 0.51979
Target:  5'- -gGCCCGcGGCcagguCCuCGCCCGGcAGCGg -3'
miRNA:   3'- caCGGGC-CCGc----GGuGCGGGUCuUCGU- -5'
5205 5' -63.5 NC_001798.1 + 2242 0.68 0.455704
Target:  5'- -gGCCgaaggcggCGGGCGCgC-CGCCgGGggGCGg -3'
miRNA:   3'- caCGG--------GCCCGCG-GuGCGGgUCuuCGU- -5'
5205 5' -63.5 NC_001798.1 + 2326 0.71 0.299686
Target:  5'- -gGgCCGGGCGCCACGgCgCGGGgaagAGCGg -3'
miRNA:   3'- caCgGGCCCGCGGUGCgG-GUCU----UCGU- -5'
5205 5' -63.5 NC_001798.1 + 2611 0.68 0.455704
Target:  5'- -gGCgCgGGGCGCCgcccggcgGCGCCCuggccGggGCGg -3'
miRNA:   3'- caCG-GgCCCGCGG--------UGCGGGu----CuuCGU- -5'
5205 5' -63.5 NC_001798.1 + 2794 0.66 0.529246
Target:  5'- -gGCgCGGGCuccgcggcagcGCCGgGCCCAGGgccccGGCGa -3'
miRNA:   3'- caCGgGCCCG-----------CGGUgCGGGUCU-----UCGU- -5'
5205 5' -63.5 NC_001798.1 + 2994 0.66 0.538765
Target:  5'- -gGCCCgcGGGCcCCGgGCgCGGggGCGc -3'
miRNA:   3'- caCGGG--CCCGcGGUgCGgGUCuuCGU- -5'
5205 5' -63.5 NC_001798.1 + 3202 0.7 0.349224
Target:  5'- -gGCCggcgcggaggCGGGCGCgGCGCUCAGgcGCc -3'
miRNA:   3'- caCGG----------GCCCGCGgUGCGGGUCuuCGu -5'
5205 5' -63.5 NC_001798.1 + 3517 0.68 0.421047
Target:  5'- -cGCCaCGuGCGCCAgGCCCcagccGAAGCGg -3'
miRNA:   3'- caCGG-GCcCGCGGUgCGGGu----CUUCGU- -5'
5205 5' -63.5 NC_001798.1 + 3611 0.69 0.356001
Target:  5'- cUGCUguUGcGCGCCGCGCCCgagauccGGAAGCAg -3'
miRNA:   3'- cACGG--GCcCGCGGUGCGGG-------UCUUCGU- -5'
5205 5' -63.5 NC_001798.1 + 3663 0.75 0.158858
Target:  5'- cGUcCCCGGGCGCCACGCgCGGGuucuggAGCc -3'
miRNA:   3'- -CAcGGGCCCGCGGUGCGgGUCU------UCGu -5'
5205 5' -63.5 NC_001798.1 + 3767 0.75 0.160422
Target:  5'- -aGCUCGGGCGCCcacacgggcgccgggGCGCCC-GAGGCc -3'
miRNA:   3'- caCGGGCCCGCGG---------------UGCGGGuCUUCGu -5'
5205 5' -63.5 NC_001798.1 + 3829 0.76 0.127138
Target:  5'- -cGCCuCGGGCGCC-C-CCCAGAGGCc -3'
miRNA:   3'- caCGG-GCCCGCGGuGcGGGUCUUCGu -5'
5205 5' -63.5 NC_001798.1 + 3994 0.69 0.396124
Target:  5'- -cGCCgGGGcCGCC-CgGCCguGAAGCGg -3'
miRNA:   3'- caCGGgCCC-GCGGuG-CGGguCUUCGU- -5'
5205 5' -63.5 NC_001798.1 + 4019 0.68 0.455704
Target:  5'- -gGCCCGuGGCGUCGCGgCCGGccaccgccgcgcGGGCc -3'
miRNA:   3'- caCGGGC-CCGCGGUGCgGGUC------------UUCGu -5'
5205 5' -63.5 NC_001798.1 + 4073 0.66 0.538765
Target:  5'- -gGCCCGcGGuCGCCGCggggGUCCGGGccggGGCGg -3'
miRNA:   3'- caCGGGC-CC-GCGGUG----CGGGUCU----UCGU- -5'
5205 5' -63.5 NC_001798.1 + 4129 0.74 0.17093
Target:  5'- -gGCCgGGGCGCCGCcCCCGGGgcccucgcgGGCAc -3'
miRNA:   3'- caCGGgCCCGCGGUGcGGGUCU---------UCGU- -5'
5205 5' -63.5 NC_001798.1 + 5372 0.67 0.510401
Target:  5'- -cGCCCGcGCGuCCGCGUCCGu-GGCGg -3'
miRNA:   3'- caCGGGCcCGC-GGUGCGGGUcuUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.