miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5206 3' -60.1 NC_001798.1 + 88813 0.67 0.639889
Target:  5'- -cAGCGCGCGUCAcguacgcgcGCgUCGCgAGGAg- -3'
miRNA:   3'- cuUCGCGCGCAGU---------CGgGGCG-UCCUag -5'
5206 3' -60.1 NC_001798.1 + 79971 0.68 0.619797
Target:  5'- -cGGCGcCGCGUCcgccgccgGGCCCCcgGGGGUCc -3'
miRNA:   3'- cuUCGC-GCGCAG--------UCGGGGcgUCCUAG- -5'
5206 3' -60.1 NC_001798.1 + 51271 0.68 0.619797
Target:  5'- -cAGCGCcaucacGCG--GGCCCCGCGGGGa- -3'
miRNA:   3'- cuUCGCG------CGCagUCGGGGCGUCCUag -5'
5206 3' -60.1 NC_001798.1 + 1413 0.68 0.618793
Target:  5'- -cGGCGCGCccaGGCCCCagcgcgcGCAGGcgCg -3'
miRNA:   3'- cuUCGCGCGcagUCGGGG-------CGUCCuaG- -5'
5206 3' -60.1 NC_001798.1 + 93092 0.68 0.613774
Target:  5'- cGggGCGCGCG-CgacgccgggaacaagGGCCCgGCGGGc-- -3'
miRNA:   3'- -CuuCGCGCGCaG---------------UCGGGgCGUCCuag -5'
5206 3' -60.1 NC_001798.1 + 3947 0.68 0.609761
Target:  5'- -uAGCGCGCGUagaaGGCgCCGgAGGccgcGUCg -3'
miRNA:   3'- cuUCGCGCGCAg---UCGgGGCgUCC----UAG- -5'
5206 3' -60.1 NC_001798.1 + 150452 0.68 0.599742
Target:  5'- --cGCGCGgGgcgaCGGCCgCGCGGGggCg -3'
miRNA:   3'- cuuCGCGCgCa---GUCGGgGCGUCCuaG- -5'
5206 3' -60.1 NC_001798.1 + 60949 0.68 0.599742
Target:  5'- cGAGGCGCGuCGUgucacCGGgCCCGgAGGcgCg -3'
miRNA:   3'- -CUUCGCGC-GCA-----GUCgGGGCgUCCuaG- -5'
5206 3' -60.1 NC_001798.1 + 58075 0.68 0.589745
Target:  5'- --uGCGUaGaCGgagaaaaagaGGCCCCGCAGGGUCg -3'
miRNA:   3'- cuuCGCG-C-GCag--------UCGGGGCGUCCUAG- -5'
5206 3' -60.1 NC_001798.1 + 4618 0.68 0.579778
Target:  5'- --uGCGCGcCGUCGcGCUCCGgggggggcgaCGGGAUCg -3'
miRNA:   3'- cuuCGCGC-GCAGU-CGGGGC----------GUCCUAG- -5'
5206 3' -60.1 NC_001798.1 + 52143 0.68 0.578783
Target:  5'- -cGGCGC-CGUCAaaugcguGCuCCCGCGGGAg- -3'
miRNA:   3'- cuUCGCGcGCAGU-------CG-GGGCGUCCUag -5'
5206 3' -60.1 NC_001798.1 + 110274 0.68 0.569847
Target:  5'- -cGGCGCGaCcUCGGCCUCGUGGGGg- -3'
miRNA:   3'- cuUCGCGC-GcAGUCGGGGCGUCCUag -5'
5206 3' -60.1 NC_001798.1 + 78526 0.68 0.569847
Target:  5'- -cAGCGCGCGgaGGCCaCCGagcGGGUCa -3'
miRNA:   3'- cuUCGCGCGCagUCGG-GGCgu-CCUAG- -5'
5206 3' -60.1 NC_001798.1 + 76127 0.69 0.559958
Target:  5'- gGGAGCcguauacaGCGCGaaGGCCCUGCAGGc-- -3'
miRNA:   3'- -CUUCG--------CGCGCagUCGGGGCGUCCuag -5'
5206 3' -60.1 NC_001798.1 + 133731 0.69 0.559958
Target:  5'- uGggGCGCGCGcuUCAagcugcgcgcGCCCgCGUGGGggCg -3'
miRNA:   3'- -CuuCGCGCGC--AGU----------CGGG-GCGUCCuaG- -5'
5206 3' -60.1 NC_001798.1 + 94990 0.69 0.550118
Target:  5'- -cGGCGgcCGCcUgGGCCCCGCAGGGc- -3'
miRNA:   3'- cuUCGC--GCGcAgUCGGGGCGUCCUag -5'
5206 3' -60.1 NC_001798.1 + 120837 0.69 0.550118
Target:  5'- uGAGCaGCuCGUCggcGGCCCCGCGGaGGUUg -3'
miRNA:   3'- cUUCG-CGcGCAG---UCGGGGCGUC-CUAG- -5'
5206 3' -60.1 NC_001798.1 + 123410 0.69 0.540331
Target:  5'- gGGAGC-CGCG---GCCCCGCcGGGUCa -3'
miRNA:   3'- -CUUCGcGCGCaguCGGGGCGuCCUAG- -5'
5206 3' -60.1 NC_001798.1 + 93300 0.69 0.530604
Target:  5'- -uGGCGCGCGcCgcgGGCCUCGUGGGcgCc -3'
miRNA:   3'- cuUCGCGCGCaG---UCGGGGCGUCCuaG- -5'
5206 3' -60.1 NC_001798.1 + 27251 0.69 0.530604
Target:  5'- gGAGGCGgcCGCGggaccgCAGCCCCGUGGcGcgCg -3'
miRNA:   3'- -CUUCGC--GCGCa-----GUCGGGGCGUC-CuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.