miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5206 3' -60.1 NC_001798.1 + 25412 0.66 0.709606
Target:  5'- --cGCGCGCGcUGGCCUCGCuGGccgCg -3'
miRNA:   3'- cuuCGCGCGCaGUCGGGGCGuCCua-G- -5'
5206 3' -60.1 NC_001798.1 + 26348 0.67 0.64993
Target:  5'- --cGUGCGCGgCGGCCCgGC-GGAg- -3'
miRNA:   3'- cuuCGCGCGCaGUCGGGgCGuCCUag -5'
5206 3' -60.1 NC_001798.1 + 27251 0.69 0.530604
Target:  5'- gGAGGCGgcCGCGggaccgCAGCCCCGUGGcGcgCg -3'
miRNA:   3'- -CUUCGC--GCGCa-----GUCGGGGCGUC-CuaG- -5'
5206 3' -60.1 NC_001798.1 + 27508 0.73 0.32475
Target:  5'- aAAGcCGCGCGggGGCgCCCGCGGGAa- -3'
miRNA:   3'- cUUC-GCGCGCagUCG-GGGCGUCCUag -5'
5206 3' -60.1 NC_001798.1 + 27545 0.74 0.270651
Target:  5'- -cGGCGCGCGgggggaggggCGGCgCCCGCGGGGg- -3'
miRNA:   3'- cuUCGCGCGCa---------GUCG-GGGCGUCCUag -5'
5206 3' -60.1 NC_001798.1 + 27609 0.66 0.729081
Target:  5'- gGggGCGCGCGgggCuGCCCUGCc----- -3'
miRNA:   3'- -CuuCGCGCGCa--GuCGGGGCGuccuag -5'
5206 3' -60.1 NC_001798.1 + 28799 0.67 0.639889
Target:  5'- -cGGCGCGCGgguccUCcGCCgCCGCGGGcccgggccGUCg -3'
miRNA:   3'- cuUCGCGCGC-----AGuCGG-GGCGUCC--------UAG- -5'
5206 3' -60.1 NC_001798.1 + 29659 0.71 0.428819
Target:  5'- cGAGCGacggaGCGgCGGCCCgGCGGGAg- -3'
miRNA:   3'- cUUCGCg----CGCaGUCGGGgCGUCCUag -5'
5206 3' -60.1 NC_001798.1 + 31345 0.66 0.738703
Target:  5'- gGggGCGCGCG-CAGgCgCgGCGGGugggCg -3'
miRNA:   3'- -CuuCGCGCGCaGUCgG-GgCGUCCua--G- -5'
5206 3' -60.1 NC_001798.1 + 31570 0.66 0.709606
Target:  5'- cGggGCGCGCcgcgCGcCCCCGCGcGGccGUCg -3'
miRNA:   3'- -CuuCGCGCGca--GUcGGGGCGU-CC--UAG- -5'
5206 3' -60.1 NC_001798.1 + 31897 0.76 0.218197
Target:  5'- aGAGGCGCGgGUCggacucgGGCCCCGCGGccUCg -3'
miRNA:   3'- -CUUCGCGCgCAG-------UCGGGGCGUCcuAG- -5'
5206 3' -60.1 NC_001798.1 + 36519 0.73 0.310507
Target:  5'- gGggGCGCGCGgCGGCCggGCGGGggCg -3'
miRNA:   3'- -CuuCGCGCGCaGUCGGggCGUCCuaG- -5'
5206 3' -60.1 NC_001798.1 + 36561 0.73 0.310507
Target:  5'- gGggGCGCGCGgCGGCCggGCGGGggCg -3'
miRNA:   3'- -CuuCGCGCGCaGUCGGggCGUCCuaG- -5'
5206 3' -60.1 NC_001798.1 + 36603 0.73 0.310507
Target:  5'- gGggGCGCGCGgCGGCCggGCGGGggCg -3'
miRNA:   3'- -CuuCGCGCGCaGUCGGggCGUCCuaG- -5'
5206 3' -60.1 NC_001798.1 + 36645 0.66 0.738703
Target:  5'- gGggGCGCgcuuuccccGCGUC-GCCCCuCGGGuUCc -3'
miRNA:   3'- -CuuCGCG---------CGCAGuCGGGGcGUCCuAG- -5'
5206 3' -60.1 NC_001798.1 + 38203 0.7 0.486763
Target:  5'- gGAGGCGCggacuaaauaacuccGCG-CGGCCaggcaCGCGGGGUCc -3'
miRNA:   3'- -CUUCGCG---------------CGCaGUCGGg----GCGUCCUAG- -5'
5206 3' -60.1 NC_001798.1 + 43129 0.67 0.669963
Target:  5'- cGGGCGCGCGUCccgcGUCaCGCGGGcccaGUCg -3'
miRNA:   3'- cUUCGCGCGCAGu---CGGgGCGUCC----UAG- -5'
5206 3' -60.1 NC_001798.1 + 43870 0.71 0.411559
Target:  5'- -cAGCGgaaacccaGCGgccgCGGCCCCGCGGGAg- -3'
miRNA:   3'- cuUCGCg-------CGCa---GUCGGGGCGUCCUag -5'
5206 3' -60.1 NC_001798.1 + 47841 0.7 0.489572
Target:  5'- --cGCGCGCGcUCcuccaccccccgggGGCCCCGUGGGcgCc -3'
miRNA:   3'- cuuCGCGCGC-AG--------------UCGGGGCGUCCuaG- -5'
5206 3' -60.1 NC_001798.1 + 51271 0.68 0.619797
Target:  5'- -cAGCGCcaucacGCG--GGCCCCGCGGGGa- -3'
miRNA:   3'- cuUCGCG------CGCagUCGGGGCGUCCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.