miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5206 3' -60.1 NC_001798.1 + 84 0.67 0.659957
Target:  5'- cGGGCGgGCGgcagggCAGCCCCGCGc---- -3'
miRNA:   3'- cUUCGCgCGCa-----GUCGGGGCGUccuag -5'
5206 3' -60.1 NC_001798.1 + 1146 0.74 0.270651
Target:  5'- -cGGCgGCGUGgcCAGCCCCGCGGcGGUCc -3'
miRNA:   3'- cuUCG-CGCGCa-GUCGGGGCGUC-CUAG- -5'
5206 3' -60.1 NC_001798.1 + 1413 0.68 0.618793
Target:  5'- -cGGCGCGCccaGGCCCCagcgcgcGCAGGcgCg -3'
miRNA:   3'- cuUCGCGCGcagUCGGGG-------CGUCCuaG- -5'
5206 3' -60.1 NC_001798.1 + 2283 0.66 0.699769
Target:  5'- -cAGCGCGCGgccagcgaGGCCagcgCGCGcGGGUCg -3'
miRNA:   3'- cuUCGCGCGCag------UCGGg---GCGU-CCUAG- -5'
5206 3' -60.1 NC_001798.1 + 2485 0.72 0.394736
Target:  5'- cGGGCcgGCGgGUCAGCgCCGCGGGGc- -3'
miRNA:   3'- cUUCG--CGCgCAGUCGgGGCGUCCUag -5'
5206 3' -60.1 NC_001798.1 + 2537 0.72 0.354675
Target:  5'- cGggGCGgGgGgcgCGGcCCCCGCGGGAg- -3'
miRNA:   3'- -CuuCGCgCgCa--GUC-GGGGCGUCCUag -5'
5206 3' -60.1 NC_001798.1 + 2974 0.66 0.71938
Target:  5'- -cGGCGUGCGgcggggCGGCcggCCCGCGGGc-- -3'
miRNA:   3'- cuUCGCGCGCa-----GUCG---GGGCGUCCuag -5'
5206 3' -60.1 NC_001798.1 + 3319 0.67 0.679939
Target:  5'- cGggGCG-GCGgcggCGGCgggcuuCCCGCGGGcGUCg -3'
miRNA:   3'- -CuuCGCgCGCa---GUCG------GGGCGUCC-UAG- -5'
5206 3' -60.1 NC_001798.1 + 3947 0.68 0.609761
Target:  5'- -uAGCGCGCGUagaaGGCgCCGgAGGccgcGUCg -3'
miRNA:   3'- cuUCGCGCGCAg---UCGgGGCgUCC----UAG- -5'
5206 3' -60.1 NC_001798.1 + 4101 0.71 0.437608
Target:  5'- cGggGCGgGC-UCGGCCCUggGCGGGcUCg -3'
miRNA:   3'- -CuuCGCgCGcAGUCGGGG--CGUCCuAG- -5'
5206 3' -60.1 NC_001798.1 + 4618 0.68 0.579778
Target:  5'- --uGCGCGcCGUCGcGCUCCGgggggggcgaCGGGAUCg -3'
miRNA:   3'- cuuCGCGC-GCAGU-CGGGGC----------GUCCUAG- -5'
5206 3' -60.1 NC_001798.1 + 5741 0.67 0.653943
Target:  5'- cGggGCcCGCGUCAucccgcgcuccGCCCCaaagggggcggggccGCAGGGUa -3'
miRNA:   3'- -CuuCGcGCGCAGU-----------CGGGG---------------CGUCCUAg -5'
5206 3' -60.1 NC_001798.1 + 5879 0.71 0.411559
Target:  5'- cGggGCcCGCGUCA-UCCCGCGGGcUCc -3'
miRNA:   3'- -CuuCGcGCGCAGUcGGGGCGUCCuAG- -5'
5206 3' -60.1 NC_001798.1 + 15702 0.67 0.64993
Target:  5'- cGGGgGCG-GUCGGUUCCGCGcuuGGGUCg -3'
miRNA:   3'- cUUCgCGCgCAGUCGGGGCGU---CCUAG- -5'
5206 3' -60.1 NC_001798.1 + 19970 0.69 0.511348
Target:  5'- cGAGC-CGCGaUAGCCCCGCcGGAc- -3'
miRNA:   3'- cUUCGcGCGCaGUCGGGGCGuCCUag -5'
5206 3' -60.1 NC_001798.1 + 21959 0.66 0.738703
Target:  5'- cGGAGCGCGgGaugacgCgGGCCCCggGCAGGGc- -3'
miRNA:   3'- -CUUCGCGCgCa-----G-UCGGGG--CGUCCUag -5'
5206 3' -60.1 NC_001798.1 + 22515 0.66 0.729081
Target:  5'- cGGAGCGCGgcuaccgaCG-CGGCCgC-CAGGAUCu -3'
miRNA:   3'- -CUUCGCGC--------GCaGUCGGgGcGUCCUAG- -5'
5206 3' -60.1 NC_001798.1 + 23558 0.66 0.689877
Target:  5'- gGggGUGCccGCGagGGCCCCGgGGGcggCg -3'
miRNA:   3'- -CuuCGCG--CGCagUCGGGGCgUCCua-G- -5'
5206 3' -60.1 NC_001798.1 + 24436 0.71 0.406465
Target:  5'- cGAGCGCGCGgugcccgccggcuaCGGCgCCGCGGGGg- -3'
miRNA:   3'- cUUCGCGCGCa-------------GUCGgGGCGUCCUag -5'
5206 3' -60.1 NC_001798.1 + 24583 0.66 0.716455
Target:  5'- gGAGGCGggcCGCGUggccguggagugccUGGCCgccugCCGCGGGAUCc -3'
miRNA:   3'- -CUUCGC---GCGCA--------------GUCGG-----GGCGUCCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.