miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5206 3' -60.1 NC_001798.1 + 84623 1.09 0.001136
Target:  5'- cGAAGCGCGCGUCAGCCCCGCAGGAUCu -3'
miRNA:   3'- -CUUCGCGCGCAGUCGGGGCGUCCUAG- -5'
5206 3' -60.1 NC_001798.1 + 31897 0.76 0.218197
Target:  5'- aGAGGCGCGgGUCggacucgGGCCCCGCGGccUCg -3'
miRNA:   3'- -CUUCGCGCgCAG-------UCGGGGCGUCcuAG- -5'
5206 3' -60.1 NC_001798.1 + 78888 0.75 0.252317
Target:  5'- -cGGCGcCGCGUCGacGCCCUGCGGaGGUCc -3'
miRNA:   3'- cuUCGC-GCGCAGU--CGGGGCGUC-CUAG- -5'
5206 3' -60.1 NC_001798.1 + 27545 0.74 0.270651
Target:  5'- -cGGCGCGCGgggggaggggCGGCgCCCGCGGGGg- -3'
miRNA:   3'- cuUCGCGCGCa---------GUCG-GGGCGUCCUag -5'
5206 3' -60.1 NC_001798.1 + 1146 0.74 0.270651
Target:  5'- -cGGCgGCGUGgcCAGCCCCGCGGcGGUCc -3'
miRNA:   3'- cuUCG-CGCGCa-GUCGGGGCGUC-CUAG- -5'
5206 3' -60.1 NC_001798.1 + 141176 0.74 0.286079
Target:  5'- gGGAGCGUGCGUUcaauuuuaagcaccuGGgCCCGCGGGAc- -3'
miRNA:   3'- -CUUCGCGCGCAG---------------UCgGGGCGUCCUag -5'
5206 3' -60.1 NC_001798.1 + 36603 0.73 0.310507
Target:  5'- gGggGCGCGCGgCGGCCggGCGGGggCg -3'
miRNA:   3'- -CuuCGCGCGCaGUCGGggCGUCCuaG- -5'
5206 3' -60.1 NC_001798.1 + 69383 0.73 0.310507
Target:  5'- -uAGCGCGCGUuccCGGagacgaCUCCGCGGGGUCg -3'
miRNA:   3'- cuUCGCGCGCA---GUC------GGGGCGUCCUAG- -5'
5206 3' -60.1 NC_001798.1 + 36519 0.73 0.310507
Target:  5'- gGggGCGCGCGgCGGCCggGCGGGggCg -3'
miRNA:   3'- -CuuCGCGCGCaGUCGGggCGUCCuaG- -5'
5206 3' -60.1 NC_001798.1 + 36561 0.73 0.310507
Target:  5'- gGggGCGCGCGgCGGCCggGCGGGggCg -3'
miRNA:   3'- -CuuCGCGCGCaGUCGGggCGUCCuaG- -5'
5206 3' -60.1 NC_001798.1 + 27508 0.73 0.32475
Target:  5'- aAAGcCGCGCGggGGCgCCCGCGGGAa- -3'
miRNA:   3'- cUUC-GCGCGCagUCG-GGGCGUCCUag -5'
5206 3' -60.1 NC_001798.1 + 145797 0.73 0.339474
Target:  5'- aGGAGCGCGCGggCGGCagaaaCGCGGGcgCg -3'
miRNA:   3'- -CUUCGCGCGCa-GUCGgg---GCGUCCuaG- -5'
5206 3' -60.1 NC_001798.1 + 131347 0.73 0.339474
Target:  5'- cGGGCGCGaCGUCggcgcccggcgcGGCCUCGgGGGAUCc -3'
miRNA:   3'- cUUCGCGC-GCAG------------UCGGGGCgUCCUAG- -5'
5206 3' -60.1 NC_001798.1 + 2537 0.72 0.354675
Target:  5'- cGggGCGgGgGgcgCGGcCCCCGCGGGAg- -3'
miRNA:   3'- -CuuCGCgCgCa--GUC-GGGGCGUCCUag -5'
5206 3' -60.1 NC_001798.1 + 134637 0.72 0.37035
Target:  5'- cGAGGUGUGCGaggucggccugCGGCCCCGCGgacacccgcagcGGGUCa -3'
miRNA:   3'- -CUUCGCGCGCa----------GUCGGGGCGU------------CCUAG- -5'
5206 3' -60.1 NC_001798.1 + 89141 0.72 0.37035
Target:  5'- cAGGUGCGCGaCGGCCucgggCCGCAGGGa- -3'
miRNA:   3'- cUUCGCGCGCaGUCGG-----GGCGUCCUag -5'
5206 3' -60.1 NC_001798.1 + 60767 0.72 0.386493
Target:  5'- cGAAGCgGCGCaa-AGgCCUGCAGGAUCc -3'
miRNA:   3'- -CUUCG-CGCGcagUCgGGGCGUCCUAG- -5'
5206 3' -60.1 NC_001798.1 + 2485 0.72 0.394736
Target:  5'- cGGGCcgGCGgGUCAGCgCCGCGGGGc- -3'
miRNA:   3'- cUUCG--CGCgCAGUCGgGGCGUCCUag -5'
5206 3' -60.1 NC_001798.1 + 24436 0.71 0.406465
Target:  5'- cGAGCGCGCGgugcccgccggcuaCGGCgCCGCGGGGg- -3'
miRNA:   3'- cUUCGCGCGCa-------------GUCGgGGCGUCCUag -5'
5206 3' -60.1 NC_001798.1 + 110117 0.71 0.410707
Target:  5'- -cAGCuaCGuCGUCAcccacacccccuuGCCCCGCGGGAUCg -3'
miRNA:   3'- cuUCGc-GC-GCAGU-------------CGGGGCGUCCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.