miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5206 5' -58.3 NC_001798.1 + 84673 1.03 0.004261
Target:  5'- aAUGACCGCCGCGAACCGUUCGCGCUUu -3'
miRNA:   3'- -UACUGGCGGCGCUUGGCAAGCGCGAA- -5'
5206 5' -58.3 NC_001798.1 + 80627 0.78 0.20432
Target:  5'- cUGGCCGCCGCGAcccaccgcacccccGCCGcgCGCGUUa -3'
miRNA:   3'- uACUGGCGGCGCU--------------UGGCaaGCGCGAa -5'
5206 5' -58.3 NC_001798.1 + 97216 0.78 0.216193
Target:  5'- -aGACCGCCGCGGugGCCGUggagcUgGCGCUg -3'
miRNA:   3'- uaCUGGCGGCGCU--UGGCA-----AgCGCGAa -5'
5206 5' -58.3 NC_001798.1 + 24855 0.77 0.232562
Target:  5'- -aGGCCGCCGUGGccGCCGUgCGCGCc- -3'
miRNA:   3'- uaCUGGCGGCGCU--UGGCAaGCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 105410 0.75 0.294728
Target:  5'- -gGGCCGCCGCG-GCCGcggUGCGCUg -3'
miRNA:   3'- uaCUGGCGGCGCuUGGCaa-GCGCGAa -5'
5206 5' -58.3 NC_001798.1 + 104685 0.74 0.353241
Target:  5'- -cGGCCGCCGCGAACUGcgcUUUGgGCa- -3'
miRNA:   3'- uaCUGGCGGCGCUUGGC---AAGCgCGaa -5'
5206 5' -58.3 NC_001798.1 + 1363 0.73 0.410817
Target:  5'- -gGGCCGCCGCGcACgGcgUCGCGCc- -3'
miRNA:   3'- uaCUGGCGGCGCuUGgCa-AGCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 17118 0.72 0.455341
Target:  5'- -cGGCCGcCCGCGAGCgGUagUGCGCg- -3'
miRNA:   3'- uaCUGGC-GGCGCUUGgCAa-GCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 30704 0.72 0.464556
Target:  5'- cGUGACCGCCaGCGggUCGUUCaGCa--- -3'
miRNA:   3'- -UACUGGCGG-CGCuuGGCAAG-CGcgaa -5'
5206 5' -58.3 NC_001798.1 + 145527 0.72 0.473868
Target:  5'- -cGGCCGCCGCGcgcccccgcccGGCCGcccgcgUCGCGCc- -3'
miRNA:   3'- uaCUGGCGGCGC-----------UUGGCa-----AGCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 145422 0.71 0.483272
Target:  5'- -cGGCCGCCGCGcgcccccgcccGGCCGccgCGCGCc- -3'
miRNA:   3'- uaCUGGCGGCGC-----------UUGGCaa-GCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 145464 0.71 0.483272
Target:  5'- -cGGCCGCCGCGcgcccccgcccGGCCGccgCGCGCc- -3'
miRNA:   3'- uaCUGGCGGCGC-----------UUGGCaa-GCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 91096 0.71 0.483272
Target:  5'- -cGGCCGUCGUGGACCccggUGCGCUg -3'
miRNA:   3'- uaCUGGCGGCGCUUGGcaa-GCGCGAa -5'
5206 5' -58.3 NC_001798.1 + 22322 0.71 0.531541
Target:  5'- -gGGCCGCCGCcacGGACgCGgaCGCGCg- -3'
miRNA:   3'- uaCUGGCGGCG---CUUG-GCaaGCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 25204 0.7 0.541413
Target:  5'- -cGGCCGCCGCGccCCGcg-GCGCUg -3'
miRNA:   3'- uaCUGGCGGCGCuuGGCaagCGCGAa -5'
5206 5' -58.3 NC_001798.1 + 153373 0.7 0.541413
Target:  5'- -cGGCCGCCGCcacgcggcgccgGAACCGgUCGCGg-- -3'
miRNA:   3'- uaCUGGCGGCG------------CUUGGCaAGCGCgaa -5'
5206 5' -58.3 NC_001798.1 + 97639 0.7 0.581443
Target:  5'- -gGGCCGCCGCGGACgugCGggaGCGCc- -3'
miRNA:   3'- uaCUGGCGGCGCUUG---GCaagCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 1193 0.69 0.6017
Target:  5'- -cGcCCGCCGCGGccagcACCGUcccCGCGCg- -3'
miRNA:   3'- uaCuGGCGGCGCU-----UGGCAa--GCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 134165 0.69 0.611865
Target:  5'- -gGGCCGUCGCG-GCCGccCGCGCc- -3'
miRNA:   3'- uaCUGGCGGCGCuUGGCaaGCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 22840 0.69 0.621027
Target:  5'- -gGACCGCCGCccaccccgaacccGGACCGUcgccccgcCGCGCg- -3'
miRNA:   3'- uaCUGGCGGCG-------------CUUGGCAa-------GCGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.