miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5206 5' -58.3 NC_001798.1 + 1193 0.69 0.6017
Target:  5'- -cGcCCGCCGCGGccagcACCGUcccCGCGCg- -3'
miRNA:   3'- uaCuGGCGGCGCU-----UGGCAa--GCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 1363 0.73 0.410817
Target:  5'- -gGGCCGCCGCGcACgGcgUCGCGCc- -3'
miRNA:   3'- uaCUGGCGGCGCuUGgCa-AGCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 2203 0.67 0.713045
Target:  5'- -aGGCCGCCGCGcggcgcagcgGGCCcgaggCGCGCa- -3'
miRNA:   3'- uaCUGGCGGCGC----------UUGGcaa--GCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 4604 0.68 0.66175
Target:  5'- -gGGCCGCUucuucuuGCGcGCCG-UCGCGCUc -3'
miRNA:   3'- uaCUGGCGG-------CGCuUGGCaAGCGCGAa -5'
5206 5' -58.3 NC_001798.1 + 10879 0.68 0.693075
Target:  5'- -cGGCC-CCGCGAGCCauGUUCGgGUg- -3'
miRNA:   3'- uaCUGGcGGCGCUUGG--CAAGCgCGaa -5'
5206 5' -58.3 NC_001798.1 + 17118 0.72 0.455341
Target:  5'- -cGGCCGcCCGCGAGCgGUagUGCGCg- -3'
miRNA:   3'- uaCUGGC-GGCGCUUGgCAa-GCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 22322 0.71 0.531541
Target:  5'- -gGGCCGCCGCcacGGACgCGgaCGCGCg- -3'
miRNA:   3'- uaCUGGCGGCG---CUUG-GCaaGCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 22840 0.69 0.621027
Target:  5'- -gGACCGCCGCccaccccgaacccGGACCGUcgccccgcCGCGCg- -3'
miRNA:   3'- uaCUGGCGGCG-------------CUUGGCAa-------GCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 23132 0.66 0.789464
Target:  5'- ---uCCGCCGCGGACCcccuccaugCGCGCc- -3'
miRNA:   3'- uacuGGCGGCGCUUGGcaa------GCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 24207 0.67 0.722932
Target:  5'- -cGGCCGCCGUGGccaugagccGCCGcuacgaccgCGCGCa- -3'
miRNA:   3'- uaCUGGCGGCGCU---------UGGCaa-------GCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 24772 0.67 0.713045
Target:  5'- cUGGCUG-CGCGAGCUgcgGUUCGUGCg- -3'
miRNA:   3'- uACUGGCgGCGCUUGG---CAAGCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 24855 0.77 0.232562
Target:  5'- -aGGCCGCCGUGGccGCCGUgCGCGCc- -3'
miRNA:   3'- uaCUGGCGGCGCU--UGGCAaGCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 25204 0.7 0.541413
Target:  5'- -cGGCCGCCGCGccCCGcg-GCGCUg -3'
miRNA:   3'- uaCUGGCGGCGCuuGGCaagCGCGAa -5'
5206 5' -58.3 NC_001798.1 + 25839 0.68 0.679983
Target:  5'- -cGACCGCCGCcucaucgucgucaacGCCGUgCGCGCc- -3'
miRNA:   3'- uaCUGGCGGCGcu-------------UGGCAaGCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 26308 0.66 0.780309
Target:  5'- --cGCCGCUGCGGcCCGUcuacgUgGCGCUg -3'
miRNA:   3'- uacUGGCGGCGCUuGGCA-----AgCGCGAa -5'
5206 5' -58.3 NC_001798.1 + 26551 0.69 0.631215
Target:  5'- -gGACCGCCGCGGggcuggccacgccGCCGag-GCGCg- -3'
miRNA:   3'- uaCUGGCGGCGCU-------------UGGCaagCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 27253 0.68 0.683011
Target:  5'- -aGGCgGCCGCGGGaccgcagccCCGUggCGCGCg- -3'
miRNA:   3'- uaCUGgCGGCGCUU---------GGCAa-GCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 27643 0.67 0.742464
Target:  5'- --cGCCGCCGCccGCC-UUCGCGCc- -3'
miRNA:   3'- uacUGGCGGCGcuUGGcAAGCGCGaa -5'
5206 5' -58.3 NC_001798.1 + 28815 0.69 0.632234
Target:  5'- --cGCCGCCGCGGGcCCGggccgUCGgGCg- -3'
miRNA:   3'- uacUGGCGGCGCUU-GGCa----AGCgCGaa -5'
5206 5' -58.3 NC_001798.1 + 29984 0.66 0.780309
Target:  5'- -gGACCcCCGUGGGCCGUgCGcCGCc- -3'
miRNA:   3'- uaCUGGcGGCGCUUGGCAaGC-GCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.