miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5214 3' -61.1 NC_001798.1 + 79291 1.13 0.00062
Target:  5'- uGGCCCCGUGGGCGGUGGAGGAGUUCCg -3'
miRNA:   3'- -CCGGGGCACCCGCCACCUCCUCAAGG- -5'
5214 3' -61.1 NC_001798.1 + 27271 0.79 0.136474
Target:  5'- aGCCCCGUGGcgcGCGGgggGGAGGGGcugCCg -3'
miRNA:   3'- cCGGGGCACC---CGCCa--CCUCCUCaa-GG- -5'
5214 3' -61.1 NC_001798.1 + 36269 0.79 0.146909
Target:  5'- uGGaCCCCGgggUGGGCGGcggGGGGGGGUgCCg -3'
miRNA:   3'- -CC-GGGGC---ACCCGCCa--CCUCCUCAaGG- -5'
5214 3' -61.1 NC_001798.1 + 152513 0.78 0.174132
Target:  5'- cGCCCCGgcggGGGCGGagGGAGGGaaUCCc -3'
miRNA:   3'- cCGGGGCa---CCCGCCa-CCUCCUcaAGG- -5'
5214 3' -61.1 NC_001798.1 + 108109 0.75 0.253613
Target:  5'- gGGCCCCGgucugUGGGUGGUGauGGGGG-UCCu -3'
miRNA:   3'- -CCGGGGC-----ACCCGCCACc-UCCUCaAGG- -5'
5214 3' -61.1 NC_001798.1 + 95002 0.75 0.265418
Target:  5'- gGGCCCCGcaGGGCGGcgcgggccUGGAGGccGGggCCc -3'
miRNA:   3'- -CCGGGGCa-CCCGCC--------ACCUCC--UCaaGG- -5'
5214 3' -61.1 NC_001798.1 + 27216 0.74 0.303499
Target:  5'- -cCCCCG-GGGCGGggcgcGGGGGAGgcggCCg -3'
miRNA:   3'- ccGGGGCaCCCGCCa----CCUCCUCaa--GG- -5'
5214 3' -61.1 NC_001798.1 + 71386 0.74 0.310241
Target:  5'- cGGCCCUGgagGGGUuuuuGGUGGcGGGGGUgCCc -3'
miRNA:   3'- -CCGGGGCa--CCCG----CCACC-UCCUCAaGG- -5'
5214 3' -61.1 NC_001798.1 + 36407 0.73 0.315715
Target:  5'- gGGCCCCccugccgggcgGGGCGGUGGGGcGGGgUCg -3'
miRNA:   3'- -CCGGGGca---------CCCGCCACCUC-CUCaAGg -5'
5214 3' -61.1 NC_001798.1 + 129044 0.72 0.360598
Target:  5'- cGCCCCGgaucGGGCGcUGGuGGAGUUa- -3'
miRNA:   3'- cCGGGGCa---CCCGCcACCuCCUCAAgg -5'
5214 3' -61.1 NC_001798.1 + 113131 0.72 0.375995
Target:  5'- aGGCCgCGUGuGGCGG-GGAGGAcGgagaacugCCg -3'
miRNA:   3'- -CCGGgGCAC-CCGCCaCCUCCU-Caa------GG- -5'
5214 3' -61.1 NC_001798.1 + 101853 0.72 0.408092
Target:  5'- gGGUCCCG-GcGGCGGcGGAGGGGggUg -3'
miRNA:   3'- -CCGGGGCaC-CCGCCaCCUCCUCaaGg -5'
5214 3' -61.1 NC_001798.1 + 47865 0.71 0.433261
Target:  5'- gGGCCCCGUGGGCGccGGcGGGcGcUCg -3'
miRNA:   3'- -CCGGGGCACCCGCcaCC-UCCuCaAGg -5'
5214 3' -61.1 NC_001798.1 + 76037 0.71 0.441849
Target:  5'- gGGCCCCGaGGccauccaggcGCGGcUGGAGGAcGUgcggaUCCa -3'
miRNA:   3'- -CCGGGGCaCC----------CGCC-ACCUCCU-CA-----AGG- -5'
5214 3' -61.1 NC_001798.1 + 2551 0.71 0.450533
Target:  5'- cGGCCCCcgcgggagGGGCGGccgcgGGGcGGGGggcgUCCg -3'
miRNA:   3'- -CCGGGGca------CCCGCCa----CCU-CCUCa---AGG- -5'
5214 3' -61.1 NC_001798.1 + 15058 0.71 0.459309
Target:  5'- gGGCCCgGggcgcgcGGGgGGUGGuuuguuGGGGUUCg -3'
miRNA:   3'- -CCGGGgCa------CCCgCCACCu-----CCUCAAGg -5'
5214 3' -61.1 NC_001798.1 + 85280 0.7 0.47713
Target:  5'- aGGCUUCGgggGGGCGG-GGGccGGGG-UCCg -3'
miRNA:   3'- -CCGGGGCa--CCCGCCaCCU--CCUCaAGG- -5'
5214 3' -61.1 NC_001798.1 + 31538 0.7 0.495286
Target:  5'- gGGCCCCG-GGG-GG-GGAGGucugCCa -3'
miRNA:   3'- -CCGGGGCaCCCgCCaCCUCCucaaGG- -5'
5214 3' -61.1 NC_001798.1 + 51019 0.7 0.504481
Target:  5'- --gCCCGaGGGCGGUGGAgucggguuaauGGGGUaCCu -3'
miRNA:   3'- ccgGGGCaCCCGCCACCU-----------CCUCAaGG- -5'
5214 3' -61.1 NC_001798.1 + 104999 0.69 0.523086
Target:  5'- cGGCgCUGcGGGUGGUcaGGGGGAagUCCg -3'
miRNA:   3'- -CCGgGGCaCCCGCCA--CCUCCUcaAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.