miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5214 3' -61.1 NC_001798.1 + 2395 0.66 0.734834
Target:  5'- aGGCCUCcaGGGCGGcGGccGAGggcgCCg -3'
miRNA:   3'- -CCGGGGcaCCCGCCaCCucCUCaa--GG- -5'
5214 3' -61.1 NC_001798.1 + 2551 0.71 0.450533
Target:  5'- cGGCCCCcgcgggagGGGCGGccgcgGGGcGGGGggcgUCCg -3'
miRNA:   3'- -CCGGGGca------CCCGCCa----CCU-CCUCa---AGG- -5'
5214 3' -61.1 NC_001798.1 + 3001 0.68 0.580294
Target:  5'- gGGCCCCGggcgcggGGGCGcGgcgGGccGGGcUCCg -3'
miRNA:   3'- -CCGGGGCa------CCCGC-Ca--CCucCUCaAGG- -5'
5214 3' -61.1 NC_001798.1 + 3887 0.67 0.638697
Target:  5'- cGCCCCGgGGGCGG-GGGGccGgccCCg -3'
miRNA:   3'- cCGGGGCaCCCGCCaCCUCcuCaa-GG- -5'
5214 3' -61.1 NC_001798.1 + 4112 0.66 0.716003
Target:  5'- cGGCCC--UGGGCGGgcucGGccGGGGcgCCg -3'
miRNA:   3'- -CCGGGgcACCCGCCa---CCu-CCUCaaGG- -5'
5214 3' -61.1 NC_001798.1 + 5602 0.66 0.704576
Target:  5'- cGCCCCGUugguccgcGGGCGGcuccgccccaaaGGGGGcGGggCCg -3'
miRNA:   3'- cCGGGGCA--------CCCGCCa-----------CCUCC-UCaaGG- -5'
5214 3' -61.1 NC_001798.1 + 5905 0.66 0.696912
Target:  5'- cGCCCCGa-GGCGGgcccggacGGGGGGcgggccGUUCCu -3'
miRNA:   3'- cCGGGGCacCCGCCa-------CCUCCU------CAAGG- -5'
5214 3' -61.1 NC_001798.1 + 6231 0.68 0.628935
Target:  5'- gGGCCggCCGgggggacGGGCGGgggacgGGGGGAcGggCCg -3'
miRNA:   3'- -CCGG--GGCa------CCCGCCa-----CCUCCU-CaaGG- -5'
5214 3' -61.1 NC_001798.1 + 11655 0.67 0.673747
Target:  5'- -uCCCCGgGGGCGGgggucgggucucgGGGGGAGgaCg -3'
miRNA:   3'- ccGGGGCaCCCGCCa------------CCUCCUCaaGg -5'
5214 3' -61.1 NC_001798.1 + 12698 0.68 0.606504
Target:  5'- aGGCCCgGguugcuggGGGCGGcGGGGGcGUggugcggcgcgacgUCCu -3'
miRNA:   3'- -CCGGGgCa-------CCCGCCaCCUCCuCA--------------AGG- -5'
5214 3' -61.1 NC_001798.1 + 15058 0.71 0.459309
Target:  5'- gGGCCCgGggcgcgcGGGgGGUGGuuuguuGGGGUUCg -3'
miRNA:   3'- -CCGGGgCa------CCCgCCACCu-----CCUCAAGg -5'
5214 3' -61.1 NC_001798.1 + 15331 0.68 0.579327
Target:  5'- gGGCCCCGgcgcgGuagcggggggcgaGGCGGUGaGGGGGGaaucggCCg -3'
miRNA:   3'- -CCGGGGCa----C-------------CCGCCAC-CUCCUCaa----GG- -5'
5214 3' -61.1 NC_001798.1 + 15439 0.67 0.667923
Target:  5'- gGGCCCCGgagucgugGGGCGG-GGGGucgcguGGGUa-- -3'
miRNA:   3'- -CCGGGGCa-------CCCGCCaCCUC------CUCAagg -5'
5214 3' -61.1 NC_001798.1 + 15555 0.67 0.686323
Target:  5'- cGGCCCCG-GGcguugccgccgccGCGGcGG-GGAGUggcgacgacUCCa -3'
miRNA:   3'- -CCGGGGCaCC-------------CGCCaCCuCCUCA---------AGG- -5'
5214 3' -61.1 NC_001798.1 + 22131 0.66 0.724513
Target:  5'- cGGCCCCuuugGGGcCGGcGGGGGccaacgggagcgcGGggCCg -3'
miRNA:   3'- -CCGGGGca--CCC-GCCaCCUCC-------------UCaaGG- -5'
5214 3' -61.1 NC_001798.1 + 23572 0.67 0.677623
Target:  5'- gGGCCCCGgGGGCGGcgccccGGccGAGc-CCg -3'
miRNA:   3'- -CCGGGGCaCCCGCCa-----CCucCUCaaGG- -5'
5214 3' -61.1 NC_001798.1 + 23868 0.66 0.725455
Target:  5'- cGCCCCGgccucugggGGGCgcccgaGGcGGAGGAGgcgcgggCCc -3'
miRNA:   3'- cCGGGGCa--------CCCG------CCaCCUCCUCaa-----GG- -5'
5214 3' -61.1 NC_001798.1 + 25335 0.67 0.687288
Target:  5'- cGCCCCGcGGGCcGUGGccGAGcUCa -3'
miRNA:   3'- cCGGGGCaCCCGcCACCucCUCaAGg -5'
5214 3' -61.1 NC_001798.1 + 26518 0.67 0.658198
Target:  5'- uGGCCgCGgcGGGCGGcggcgUGGAGGuGGUggggaCCg -3'
miRNA:   3'- -CCGGgGCa-CCCGCC-----ACCUCC-UCAa----GG- -5'
5214 3' -61.1 NC_001798.1 + 27183 0.66 0.744132
Target:  5'- gGGCCgCG-GGcGCGGggGGAGGGGc--- -3'
miRNA:   3'- -CCGGgGCaCC-CGCCa-CCUCCUCaagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.