miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5214 5' -51.4 NC_001798.1 + 121260 0.65 0.994343
Target:  5'- gCGGGGGucccgcuguccgccCUCGUgCGcgGCCGCcccgacgGUGGGg -3'
miRNA:   3'- -GCCCUU--------------GAGUAgGUuaUGGCG-------UACCC- -5'
5214 5' -51.4 NC_001798.1 + 95203 0.66 0.993826
Target:  5'- cCGGGAACUgGgCCA--GCCuGC-UGGGc -3'
miRNA:   3'- -GCCCUUGAgUaGGUuaUGG-CGuACCC- -5'
5214 5' -51.4 NC_001798.1 + 59509 0.66 0.993826
Target:  5'- aGGGcAAC----CCAAaGCCGUAUGGGg -3'
miRNA:   3'- gCCC-UUGaguaGGUUaUGGCGUACCC- -5'
5214 5' -51.4 NC_001798.1 + 141175 0.66 0.99298
Target:  5'- gGGGAGCgugCGUUCAAUuuuaagcaccugggcCCGCGggacgGGGg -3'
miRNA:   3'- gCCCUUGa--GUAGGUUAu--------------GGCGUa----CCC- -5'
5214 5' -51.4 NC_001798.1 + 91126 0.66 0.99288
Target:  5'- gCGGGGGCguccUCGUCCAGcgaaCGCG-GGGc -3'
miRNA:   3'- -GCCCUUG----AGUAGGUUaug-GCGUaCCC- -5'
5214 5' -51.4 NC_001798.1 + 97737 0.66 0.99288
Target:  5'- gGGGAGCUCGagaaGAUGCUGC--GGGu -3'
miRNA:   3'- gCCCUUGAGUagg-UUAUGGCGuaCCC- -5'
5214 5' -51.4 NC_001798.1 + 29561 0.66 0.99288
Target:  5'- gGGGGAaUCGUa-AAUGCCGCcccuuUGGGg -3'
miRNA:   3'- gCCCUUgAGUAggUUAUGGCGu----ACCC- -5'
5214 5' -51.4 NC_001798.1 + 3965 0.66 0.99288
Target:  5'- cCGGaGGccGCgucggCGUCCAGcucgACCGCcgGGGc -3'
miRNA:   3'- -GCC-CU--UGa----GUAGGUUa---UGGCGuaCCC- -5'
5214 5' -51.4 NC_001798.1 + 46671 0.66 0.991822
Target:  5'- aCGuGGGGCcCGgggCCgGAUACCGCggGGGc -3'
miRNA:   3'- -GC-CCUUGaGUa--GG-UUAUGGCGuaCCC- -5'
5214 5' -51.4 NC_001798.1 + 150621 0.66 0.991822
Target:  5'- gGGGGGC---UCCuggGCCGCGcGGGg -3'
miRNA:   3'- gCCCUUGaguAGGuuaUGGCGUaCCC- -5'
5214 5' -51.4 NC_001798.1 + 68432 0.66 0.991822
Target:  5'- uGGGggUUCGUgacuuggcucgCCGAgcACCGCG-GGGa -3'
miRNA:   3'- gCCCuuGAGUA-----------GGUUa-UGGCGUaCCC- -5'
5214 5' -51.4 NC_001798.1 + 142951 0.66 0.99113
Target:  5'- gGGGAcggccgggcagagccGCcCAUCCGAggACCGCGUGu- -3'
miRNA:   3'- gCCCU---------------UGaGUAGGUUa-UGGCGUACcc -5'
5214 5' -51.4 NC_001798.1 + 128648 0.66 0.990643
Target:  5'- cCGGGGAcCUCG-CCGaggagaacGUGCaCGCGUGcGGg -3'
miRNA:   3'- -GCCCUU-GAGUaGGU--------UAUG-GCGUAC-CC- -5'
5214 5' -51.4 NC_001798.1 + 88023 0.66 0.989334
Target:  5'- cCGGGGgcGCUUggCCGGggagggcaggGCCGC-UGGGg -3'
miRNA:   3'- -GCCCU--UGAGuaGGUUa---------UGGCGuACCC- -5'
5214 5' -51.4 NC_001798.1 + 103452 0.67 0.987887
Target:  5'- aGGGggUUC-UCCGGaggcaggGCCGCAcgcaccgugucUGGGu -3'
miRNA:   3'- gCCCuuGAGuAGGUUa------UGGCGU-----------ACCC- -5'
5214 5' -51.4 NC_001798.1 + 133264 0.67 0.987887
Target:  5'- uGGGAGCUguUCCGucuGUgcagcaccaugGCCGCgugccugcaGUGGGa -3'
miRNA:   3'- gCCCUUGAguAGGU---UA-----------UGGCG---------UACCC- -5'
5214 5' -51.4 NC_001798.1 + 69195 0.67 0.986293
Target:  5'- gGGGAGgUCGguggGGUGCCGCA-GGGc -3'
miRNA:   3'- gCCCUUgAGUagg-UUAUGGCGUaCCC- -5'
5214 5' -51.4 NC_001798.1 + 35521 0.67 0.986293
Target:  5'- aGGGGuucuCUCcgCCGcgGCCgGCGcGGGg -3'
miRNA:   3'- gCCCUu---GAGuaGGUuaUGG-CGUaCCC- -5'
5214 5' -51.4 NC_001798.1 + 125319 0.67 0.984542
Target:  5'- uCGGGGGC-CAggaacUCCAGcuugGCCGUGUGGu -3'
miRNA:   3'- -GCCCUUGaGU-----AGGUUa---UGGCGUACCc -5'
5214 5' -51.4 NC_001798.1 + 10704 0.67 0.983413
Target:  5'- aGGGGACcgcaggCAUCCAGggguuCCGCggcccacaguaguuuGUGGGc -3'
miRNA:   3'- gCCCUUGa-----GUAGGUUau---GGCG---------------UACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.