miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5214 5' -51.4 NC_001798.1 + 3965 0.66 0.99288
Target:  5'- cCGGaGGccGCgucggCGUCCAGcucgACCGCcgGGGc -3'
miRNA:   3'- -GCC-CU--UGa----GUAGGUUa---UGGCGuaCCC- -5'
5214 5' -51.4 NC_001798.1 + 10704 0.67 0.983413
Target:  5'- aGGGGACcgcaggCAUCCAGggguuCCGCggcccacaguaguuuGUGGGc -3'
miRNA:   3'- gCCCUUGa-----GUAGGUUau---GGCG---------------UACCC- -5'
5214 5' -51.4 NC_001798.1 + 13286 0.69 0.956635
Target:  5'- aGGGGcACUCGguguauUCCAuaACCGUgAUGGGg -3'
miRNA:   3'- gCCCU-UGAGU------AGGUuaUGGCG-UACCC- -5'
5214 5' -51.4 NC_001798.1 + 13377 0.68 0.972867
Target:  5'- uCGGGc-CUCGUCCGAagccCCGCGcacgaucUGGGg -3'
miRNA:   3'- -GCCCuuGAGUAGGUUau--GGCGU-------ACCC- -5'
5214 5' -51.4 NC_001798.1 + 15216 0.7 0.939244
Target:  5'- gGGGAGCgUCcgCgGGU-CCGUGUGGGu -3'
miRNA:   3'- gCCCUUG-AGuaGgUUAuGGCGUACCC- -5'
5214 5' -51.4 NC_001798.1 + 18262 0.68 0.973144
Target:  5'- cCGGGGGCcagguacgCAUCCu---CCGCggGGGu -3'
miRNA:   3'- -GCCCUUGa-------GUAGGuuauGGCGuaCCC- -5'
5214 5' -51.4 NC_001798.1 + 29561 0.66 0.99288
Target:  5'- gGGGGAaUCGUa-AAUGCCGCcccuuUGGGg -3'
miRNA:   3'- gCCCUUgAGUAggUUAUGGCGu----ACCC- -5'
5214 5' -51.4 NC_001798.1 + 32251 0.69 0.963907
Target:  5'- uGGGAGCgucgCGUCCGcguCCGgCGcUGGGg -3'
miRNA:   3'- gCCCUUGa---GUAGGUuauGGC-GU-ACCC- -5'
5214 5' -51.4 NC_001798.1 + 35521 0.67 0.986293
Target:  5'- aGGGGuucuCUCcgCCGcgGCCgGCGcGGGg -3'
miRNA:   3'- gCCCUu---GAGuaGGUuaUGG-CGUaCCC- -5'
5214 5' -51.4 NC_001798.1 + 46671 0.66 0.991822
Target:  5'- aCGuGGGGCcCGgggCCgGAUACCGCggGGGc -3'
miRNA:   3'- -GC-CCUUGaGUa--GG-UUAUGGCGuaCCC- -5'
5214 5' -51.4 NC_001798.1 + 48379 0.68 0.97028
Target:  5'- cCGcGGGGCgugCcgCCGcgACCGCAcGGGc -3'
miRNA:   3'- -GC-CCUUGa--GuaGGUuaUGGCGUaCCC- -5'
5214 5' -51.4 NC_001798.1 + 52546 0.72 0.863511
Target:  5'- aCGGG-GCUCAUCCugcagcgGCUGC-UGGGc -3'
miRNA:   3'- -GCCCuUGAGUAGGuua----UGGCGuACCC- -5'
5214 5' -51.4 NC_001798.1 + 56961 0.69 0.956635
Target:  5'- aCGGcuGGC-CcUCCAGcACCGCGUGGGg -3'
miRNA:   3'- -GCCc-UUGaGuAGGUUaUGGCGUACCC- -5'
5214 5' -51.4 NC_001798.1 + 59509 0.66 0.993826
Target:  5'- aGGGcAAC----CCAAaGCCGUAUGGGg -3'
miRNA:   3'- gCCC-UUGaguaGGUUaUGGCGUACCC- -5'
5214 5' -51.4 NC_001798.1 + 68432 0.66 0.991822
Target:  5'- uGGGggUUCGUgacuuggcucgCCGAgcACCGCG-GGGa -3'
miRNA:   3'- gCCCuuGAGUA-----------GGUUa-UGGCGUaCCC- -5'
5214 5' -51.4 NC_001798.1 + 69195 0.67 0.986293
Target:  5'- gGGGAGgUCGguggGGUGCCGCA-GGGc -3'
miRNA:   3'- gCCCUUgAGUagg-UUAUGGCGUaCCC- -5'
5214 5' -51.4 NC_001798.1 + 79325 1.11 0.007141
Target:  5'- gCGGGAACUCAUCCAAUACCGCAUGGGc -3'
miRNA:   3'- -GCCCUUGAGUAGGUUAUGGCGUACCC- -5'
5214 5' -51.4 NC_001798.1 + 88023 0.66 0.989334
Target:  5'- cCGGGGgcGCUUggCCGGggagggcaggGCCGC-UGGGg -3'
miRNA:   3'- -GCCCU--UGAGuaGGUUa---------UGGCGuACCC- -5'
5214 5' -51.4 NC_001798.1 + 91126 0.66 0.99288
Target:  5'- gCGGGGGCguccUCGUCCAGcgaaCGCG-GGGc -3'
miRNA:   3'- -GCCCUUG----AGUAGGUUaug-GCGUaCCC- -5'
5214 5' -51.4 NC_001798.1 + 95203 0.66 0.993826
Target:  5'- cCGGGAACUgGgCCA--GCCuGC-UGGGc -3'
miRNA:   3'- -GCCCUUGAgUaGGUuaUGG-CGuACCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.