miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5216 3' -57.7 NC_001798.1 + 48785 0.68 0.712177
Target:  5'- cGCAcggcACCCCCGGcGAUUcccUUCGCGAGgGc -3'
miRNA:   3'- aUGU----UGGGGGCC-CUGA---AGGCGUUCgC- -5'
5216 3' -57.7 NC_001798.1 + 49974 0.67 0.788412
Target:  5'- cGCGACCUCgGaGGGCgagUCCGuCAuGCGg -3'
miRNA:   3'- aUGUUGGGGgC-CCUGa--AGGC-GUuCGC- -5'
5216 3' -57.7 NC_001798.1 + 51431 0.71 0.531305
Target:  5'- gACGGCCCCgGGGcgcggcCUUCCGCGA-CGg -3'
miRNA:   3'- aUGUUGGGGgCCCu-----GAAGGCGUUcGC- -5'
5216 3' -57.7 NC_001798.1 + 52333 0.66 0.831856
Target:  5'- gGCAGCCCCgGGGuCguggCgGcCGAGCa -3'
miRNA:   3'- aUGUUGGGGgCCCuGaa--GgC-GUUCGc -5'
5216 3' -57.7 NC_001798.1 + 52777 0.7 0.591099
Target:  5'- -uCGGCgCCCCGGG-CgcCCGUGAGCGg -3'
miRNA:   3'- auGUUG-GGGGCCCuGaaGGCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 53029 0.67 0.806264
Target:  5'- aGCAACCcuauauCCCGGGACgcggcauaccUCCGaCcGGCGg -3'
miRNA:   3'- aUGUUGG------GGGCCCUGa---------AGGC-GuUCGC- -5'
5216 3' -57.7 NC_001798.1 + 54375 0.69 0.692268
Target:  5'- -cCGGCCCaCCGGGGgg-CCGCGGcGCGg -3'
miRNA:   3'- auGUUGGG-GGCCCUgaaGGCGUU-CGC- -5'
5216 3' -57.7 NC_001798.1 + 55565 0.68 0.712177
Target:  5'- gACaAACCCgCCGGGGCUU-CGUggGUa -3'
miRNA:   3'- aUG-UUGGG-GGCCCUGAAgGCGuuCGc -5'
5216 3' -57.7 NC_001798.1 + 58765 0.66 0.823494
Target:  5'- gACAACCCCCaGGGugccgacaaACaggggCCGCGGGgCGa -3'
miRNA:   3'- aUGUUGGGGG-CCC---------UGaa---GGCGUUC-GC- -5'
5216 3' -57.7 NC_001798.1 + 59133 0.66 0.848037
Target:  5'- cGCgAACCCCCGaGcGAUggcacccaCGCAGGCGa -3'
miRNA:   3'- aUG-UUGGGGGC-C-CUGaag-----GCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 59226 0.68 0.702251
Target:  5'- cGCGA-CCCCGGGGCUguccCCGCGAcacaucccGCa -3'
miRNA:   3'- aUGUUgGGGGCCCUGAa---GGCGUU--------CGc -5'
5216 3' -57.7 NC_001798.1 + 59745 0.66 0.848037
Target:  5'- -uCGGCCCCgGGGuGCcUCCGCuugguucccGGCGg -3'
miRNA:   3'- auGUUGGGGgCCC-UGaAGGCGu--------UCGC- -5'
5216 3' -57.7 NC_001798.1 + 60920 0.73 0.43642
Target:  5'- cGCGacGCUCCCGGGACaaUCCGCAgagacgaGGCGc -3'
miRNA:   3'- aUGU--UGGGGGCCCUGa-AGGCGU-------UCGC- -5'
5216 3' -57.7 NC_001798.1 + 66322 0.66 0.855842
Target:  5'- --aGGCCuCCCGGGuACggaUgCGCAGGUGg -3'
miRNA:   3'- augUUGG-GGGCCC-UGa--AgGCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 70578 0.67 0.779275
Target:  5'- gGCGGCCCUgGGGccgguGCgcgUCCGCcAGUGu -3'
miRNA:   3'- aUGUUGGGGgCCC-----UGa--AGGCGuUCGC- -5'
5216 3' -57.7 NC_001798.1 + 70928 0.66 0.845658
Target:  5'- gACGACCCCCgaucGGGGCgcgguggucccgccgCCGCugcuGGCc -3'
miRNA:   3'- aUGUUGGGGG----CCCUGaa-------------GGCGu---UCGc -5'
5216 3' -57.7 NC_001798.1 + 71105 0.67 0.788412
Target:  5'- gUGCGcGCCCCCGGGgacGCUgauggCgCGCGuGCGg -3'
miRNA:   3'- -AUGU-UGGGGGCCC---UGAa----G-GCGUuCGC- -5'
5216 3' -57.7 NC_001798.1 + 73248 0.66 0.848037
Target:  5'- gGgGGCCCCCGGGGac-CUGgAGGCc -3'
miRNA:   3'- aUgUUGGGGGCCCUgaaGGCgUUCGc -5'
5216 3' -57.7 NC_001798.1 + 75519 0.66 0.823494
Target:  5'- aACGGCCgUCgGGGACUUCCu--GGCGu -3'
miRNA:   3'- aUGUUGG-GGgCCCUGAAGGcguUCGC- -5'
5216 3' -57.7 NC_001798.1 + 76406 0.67 0.760619
Target:  5'- cGCGACCCa-GGGGCUcaucgaaCGCAAGCc -3'
miRNA:   3'- aUGUUGGGggCCCUGAag-----GCGUUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.