miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5216 3' -57.7 NC_001798.1 + 23827 0.71 0.560984
Target:  5'- ---cGCCCCCGGGGCgcgugCUGUAcGGCGg -3'
miRNA:   3'- auguUGGGGGCCCUGaa---GGCGU-UCGC- -5'
5216 3' -57.7 NC_001798.1 + 24703 0.7 0.591099
Target:  5'- cGCGcccccGCgCCCGGGGC--CCGCGGGCGc -3'
miRNA:   3'- aUGU-----UGgGGGCCCUGaaGGCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 25619 0.66 0.831856
Target:  5'- gGCccCCCCCGGaGuggUCCGcCGAGCGc -3'
miRNA:   3'- aUGuuGGGGGCC-CugaAGGC-GUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 26459 0.66 0.855842
Target:  5'- cGCGggcccGCCCCCGcagauacgcuGGGCgucggCCGCGGGCc -3'
miRNA:   3'- aUGU-----UGGGGGC----------CCUGaa---GGCGUUCGc -5'
5216 3' -57.7 NC_001798.1 + 26549 0.66 0.84004
Target:  5'- gGgGACCgCCgCGGGGCUggccacgCCGCcgAGGCGc -3'
miRNA:   3'- aUgUUGG-GG-GCCCUGAa------GGCG--UUCGC- -5'
5216 3' -57.7 NC_001798.1 + 27213 0.72 0.49267
Target:  5'- --aAGCCCCCGGGGCggggCGCGGGgGa -3'
miRNA:   3'- augUUGGGGGCCCUGaag-GCGUUCgC- -5'
5216 3' -57.7 NC_001798.1 + 27268 0.72 0.486984
Target:  5'- cGCAGCCCCgUggcgcgcgggggggaGGGGCUgCCGCGAGCu -3'
miRNA:   3'- aUGUUGGGG-G---------------CCCUGAaGGCGUUCGc -5'
5216 3' -57.7 NC_001798.1 + 29853 0.67 0.779275
Target:  5'- gGCGACCCCCGGG---UCU-CAGGCc -3'
miRNA:   3'- aUGUUGGGGGCCCugaAGGcGUUCGc -5'
5216 3' -57.7 NC_001798.1 + 30744 0.68 0.702251
Target:  5'- aACGACCCCC-GGAC--CCGCGuggaggccgaGGCGg -3'
miRNA:   3'- aUGUUGGGGGcCCUGaaGGCGU----------UCGC- -5'
5216 3' -57.7 NC_001798.1 + 31634 0.75 0.338277
Target:  5'- cGCcGCCCCCGuGGugU-CUGCGAGCGc -3'
miRNA:   3'- aUGuUGGGGGC-CCugAaGGCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 32030 0.66 0.814961
Target:  5'- gGCGACCgcggCCaCGGGccGCUcgccccggcgUCCGCGGGCGc -3'
miRNA:   3'- aUGUUGG----GG-GCCC--UGA----------AGGCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 32366 0.68 0.751119
Target:  5'- gGCGGCCccgagCCCGGGGC--CCGCGacccGGCGc -3'
miRNA:   3'- aUGUUGG-----GGGCCCUGaaGGCGU----UCGC- -5'
5216 3' -57.7 NC_001798.1 + 36760 0.7 0.591099
Target:  5'- aGCAACCCCUGGGGCUauaaaAGGCGc -3'
miRNA:   3'- aUGUUGGGGGCCCUGAaggcgUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 38715 0.68 0.754932
Target:  5'- aUGCAgGCCCCCGGGAUguaaaagugcaucgUCuCGCcGGCc -3'
miRNA:   3'- -AUGU-UGGGGGCCCUGa-------------AG-GCGuUCGc -5'
5216 3' -57.7 NC_001798.1 + 43888 0.69 0.686254
Target:  5'- cGCGGCCCCgCGGGAgUacuggcUCUGCAacagaaccgagugauGGCGg -3'
miRNA:   3'- aUGUUGGGG-GCCCUgA------AGGCGU---------------UCGC- -5'
5216 3' -57.7 NC_001798.1 + 46418 0.67 0.797412
Target:  5'- cACcGCCCCCccGGCggUCGCGAGCGc -3'
miRNA:   3'- aUGuUGGGGGccCUGaaGGCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 47248 0.67 0.797412
Target:  5'- gGCGGCCCCCGGccuuuGCUUCCucGCGgaAGuCGg -3'
miRNA:   3'- aUGUUGGGGGCCc----UGAAGG--CGU--UC-GC- -5'
5216 3' -57.7 NC_001798.1 + 47397 0.7 0.601205
Target:  5'- cGCGGCCCCCGuGGGuua-CGCAGGCc -3'
miRNA:   3'- aUGUUGGGGGC-CCUgaagGCGUUCGc -5'
5216 3' -57.7 NC_001798.1 + 47854 0.69 0.692268
Target:  5'- -cCAcCCCCCGGGGgccCCGUggGCGc -3'
miRNA:   3'- auGUuGGGGGCCCUgaaGGCGuuCGC- -5'
5216 3' -57.7 NC_001798.1 + 48359 0.75 0.361448
Target:  5'- cGCGGCCgCCCGGGGCcgccCCGCGGGgCGu -3'
miRNA:   3'- aUGUUGG-GGGCCCUGaa--GGCGUUC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.