miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5216 3' -57.7 NC_001798.1 + 157 0.7 0.625538
Target:  5'- cGCcGCCCCuccccccgcgcgccgCGGGGCUgccuucCCGCGGGCGc -3'
miRNA:   3'- aUGuUGGGG---------------GCCCUGAa-----GGCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 492 0.66 0.843262
Target:  5'- cGCGccccGCCCCgGGGGCUUcccccgccccuccccCCGCGcccGCGg -3'
miRNA:   3'- aUGU----UGGGGgCCCUGAA---------------GGCGUu--CGC- -5'
5216 3' -57.7 NC_001798.1 + 1351 0.66 0.823494
Target:  5'- cGCAGCuCCgCCGGG-CcgCCGCGcacGGCGu -3'
miRNA:   3'- aUGUUG-GG-GGCCCuGaaGGCGU---UCGC- -5'
5216 3' -57.7 NC_001798.1 + 2375 0.67 0.779275
Target:  5'- cACGGCCCgCGGGGCgca-GUAGGCc -3'
miRNA:   3'- aUGUUGGGgGCCCUGaaggCGUUCGc -5'
5216 3' -57.7 NC_001798.1 + 2497 0.66 0.84004
Target:  5'- -uCAGCgCCgCGGGGCgcggcggCCGCGgcGGCGg -3'
miRNA:   3'- auGUUGgGG-GCCCUGaa-----GGCGU--UCGC- -5'
5216 3' -57.7 NC_001798.1 + 2549 0.76 0.288491
Target:  5'- cGCGGCCCCCgcgggaGGGGCggCCGCGGGgCGg -3'
miRNA:   3'- aUGUUGGGGG------CCCUGaaGGCGUUC-GC- -5'
5216 3' -57.7 NC_001798.1 + 3989 0.68 0.751119
Target:  5'- -uCGACCgCCGGGGCcgcccggCCGUgAAGCGg -3'
miRNA:   3'- auGUUGGgGGCCCUGaa-----GGCG-UUCGC- -5'
5216 3' -57.7 NC_001798.1 + 4137 0.79 0.201471
Target:  5'- cGCcGCCCCCGGGGCccUCGCGGGCa -3'
miRNA:   3'- aUGuUGGGGGCCCUGaaGGCGUUCGc -5'
5216 3' -57.7 NC_001798.1 + 5577 0.67 0.800971
Target:  5'- -cCGGCCCCaaaGGGGccggcgaggucgcccCguuggUCCGCGGGCGg -3'
miRNA:   3'- auGUUGGGGg--CCCU---------------Ga----AGGCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 9903 0.68 0.741515
Target:  5'- cGCcaaCCCCGGGACcggUUCCauGCGAGCc -3'
miRNA:   3'- aUGuugGGGGCCCUG---AAGG--CGUUCGc -5'
5216 3' -57.7 NC_001798.1 + 10730 0.67 0.800971
Target:  5'- cGCGGcCCacaguaguuugugggCCCGGGuGCgUUCCGCGGGCGc -3'
miRNA:   3'- aUGUU-GG---------------GGGCCC-UG-AAGGCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 11425 0.68 0.722035
Target:  5'- cGCAggaaacGCCCCCGGGGuuguaaauCUggCCGCGggGGCGc -3'
miRNA:   3'- aUGU------UGGGGGCCCU--------GAa-GGCGU--UCGC- -5'
5216 3' -57.7 NC_001798.1 + 15863 0.7 0.611334
Target:  5'- -uCGACCCCCucGGGGuCUgUCCGCAGGgCGc -3'
miRNA:   3'- auGUUGGGGG--CCCU-GA-AGGCGUUC-GC- -5'
5216 3' -57.7 NC_001798.1 + 18596 0.67 0.797412
Target:  5'- aGCAGCCCCCccGGG---UCCGCGcGCc -3'
miRNA:   3'- aUGUUGGGGG--CCCugaAGGCGUuCGc -5'
5216 3' -57.7 NC_001798.1 + 18730 0.66 0.831856
Target:  5'- aACGaaacGCCCugCCGcGGACUUCCGCugacGCa -3'
miRNA:   3'- aUGU----UGGG--GGC-CCUGAAGGCGuu--CGc -5'
5216 3' -57.7 NC_001798.1 + 19810 0.66 0.848037
Target:  5'- gGC-ACCCguccucgcguuCUGGGGCUUCCGUugcGCGa -3'
miRNA:   3'- aUGuUGGG-----------GGCCCUGAAGGCGuu-CGC- -5'
5216 3' -57.7 NC_001798.1 + 20213 0.68 0.751119
Target:  5'- -uCGACCUCCcGGAUugcgUUUCGCAGGCGc -3'
miRNA:   3'- auGUUGGGGGcCCUG----AAGGCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 21818 0.67 0.760619
Target:  5'- gGCGgaGCCCgCGGGAUga-CGCGGGCc -3'
miRNA:   3'- aUGU--UGGGgGCCCUGaagGCGUUCGc -5'
5216 3' -57.7 NC_001798.1 + 22074 0.68 0.751119
Target:  5'- cUGCGGCCCCgcccccuuUGGGGCggagCCGCccGCGg -3'
miRNA:   3'- -AUGUUGGGG--------GCCCUGaa--GGCGuuCGC- -5'
5216 3' -57.7 NC_001798.1 + 23629 0.71 0.570982
Target:  5'- --gGACCCCCGcGGCgaCCGCGGGCc -3'
miRNA:   3'- augUUGGGGGCcCUGaaGGCGUUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.