miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5216 3' -57.7 NC_001798.1 + 154495 0.7 0.625538
Target:  5'- cGCcGCCCCuccccccgcgcgccgCGGGGCUgccuucCCGCGGGCGc -3'
miRNA:   3'- aUGuUGGGG---------------GCCCUGAa-----GGCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 153653 0.67 0.779275
Target:  5'- gGCGuACCuuCCCGcGcGGCgcgUCCGCGGGCGg -3'
miRNA:   3'- aUGU-UGG--GGGC-C-CUGa--AGGCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 153168 0.66 0.814961
Target:  5'- --gGAgCUCCGGGGC-UCCGCcGGCc -3'
miRNA:   3'- augUUgGGGGCCCUGaAGGCGuUCGc -5'
5216 3' -57.7 NC_001798.1 + 152237 0.7 0.601205
Target:  5'- gGCGGCCgCUCGGGGCcggggUCCGCccggGAGCu -3'
miRNA:   3'- aUGUUGG-GGGCCCUGa----AGGCG----UUCGc -5'
5216 3' -57.7 NC_001798.1 + 149985 0.68 0.741515
Target:  5'- cGCGGCgCCCGcGGACg-CCgggGCGAGCGg -3'
miRNA:   3'- aUGUUGgGGGC-CCUGaaGG---CGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 147235 0.7 0.631629
Target:  5'- cGCGggGgCCCCGGGGCcccgggCCGCGccGGCGg -3'
miRNA:   3'- aUGU--UgGGGGCCCUGaa----GGCGU--UCGC- -5'
5216 3' -57.7 NC_001798.1 + 147012 0.66 0.831856
Target:  5'- gGgGACCCCCGGGcgggccgggGCUuggCCGCcgAGGUGc -3'
miRNA:   3'- aUgUUGGGGGCCC---------UGAa--GGCG--UUCGC- -5'
5216 3' -57.7 NC_001798.1 + 146628 0.66 0.823494
Target:  5'- cGCAuuagGCCCCCGcGGGCaUCCGgcGGCc -3'
miRNA:   3'- aUGU----UGGGGGC-CCUGaAGGCguUCGc -5'
5216 3' -57.7 NC_001798.1 + 146438 0.66 0.84004
Target:  5'- gUGCGgaGCCCCCGGaGcccGCggCCGCAgccgAGCa -3'
miRNA:   3'- -AUGU--UGGGGGCC-C---UGaaGGCGU----UCGc -5'
5216 3' -57.7 NC_001798.1 + 144349 0.68 0.731818
Target:  5'- gACAGCCCCaGGGGCUgUUCGgGGGUc -3'
miRNA:   3'- aUGUUGGGGgCCCUGA-AGGCgUUCGc -5'
5216 3' -57.7 NC_001798.1 + 142484 0.66 0.831856
Target:  5'- gACGGCCCCCGaGGCgg-CGCGGGgGu -3'
miRNA:   3'- aUGUUGGGGGCcCUGaagGCGUUCgC- -5'
5216 3' -57.7 NC_001798.1 + 141543 0.67 0.806264
Target:  5'- gUACAcguACaCCCGGGugUUCgCGUucGCGg -3'
miRNA:   3'- -AUGU---UGgGGGCCCugAAG-GCGuuCGC- -5'
5216 3' -57.7 NC_001798.1 + 139414 0.67 0.788412
Target:  5'- cACAGCagCCCGGGGCcagacCCGCcguGCGg -3'
miRNA:   3'- aUGUUGg-GGGCCCUGaa---GGCGuu-CGC- -5'
5216 3' -57.7 NC_001798.1 + 137977 0.67 0.770007
Target:  5'- aGC-GCCCCCGccuGGGCgcgCCGCAGcucGCGg -3'
miRNA:   3'- aUGuUGGGGGC---CCUGaa-GGCGUU---CGC- -5'
5216 3' -57.7 NC_001798.1 + 135917 0.7 0.601205
Target:  5'- gACGACCCCCugccccaaacGGcCUUCCGCGgaGGCGc -3'
miRNA:   3'- aUGUUGGGGGc---------CCuGAAGGCGU--UCGC- -5'
5216 3' -57.7 NC_001798.1 + 135488 0.71 0.551034
Target:  5'- --gGACCCCgGGGACgcggacgCCGCGcacGGCGc -3'
miRNA:   3'- augUUGGGGgCCCUGaa-----GGCGU---UCGC- -5'
5216 3' -57.7 NC_001798.1 + 134656 0.67 0.788412
Target:  5'- cUGCGG-CCCCGcGGACacCCGCA-GCGg -3'
miRNA:   3'- -AUGUUgGGGGC-CCUGaaGGCGUuCGC- -5'
5216 3' -57.7 NC_001798.1 + 134155 0.72 0.49267
Target:  5'- -uCGGCCCCCGGGGCcgUCGC-GGCc -3'
miRNA:   3'- auGUUGGGGGCCCUGaaGGCGuUCGc -5'
5216 3' -57.7 NC_001798.1 + 133926 0.67 0.779275
Target:  5'- gGCAACCCCCGGG-CgucgUgGCAuggaAGCc -3'
miRNA:   3'- aUGUUGGGGGCCCuGaa--GgCGU----UCGc -5'
5216 3' -57.7 NC_001798.1 + 133486 0.67 0.788412
Target:  5'- gGCuGCCCCCcGcGCgggUCCGUGAGCGa -3'
miRNA:   3'- aUGuUGGGGGcCcUGa--AGGCGUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.