miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5216 3' -57.7 NC_001798.1 + 132133 0.66 0.83923
Target:  5'- gGCGGCCCugcgccgCCGGGGg--CCGgCGGGCGg -3'
miRNA:   3'- aUGUUGGG-------GGCCCUgaaGGC-GUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 129264 0.66 0.831856
Target:  5'- cUGCAACCgcaCCUGGuGACgUUCCucgGCAGGCa -3'
miRNA:   3'- -AUGUUGG---GGGCC-CUG-AAGG---CGUUCGc -5'
5216 3' -57.7 NC_001798.1 + 129146 0.67 0.788412
Target:  5'- cUGgAGCUCCgGGGAgCUgguucgCCGCGAGCc -3'
miRNA:   3'- -AUgUUGGGGgCCCU-GAa-----GGCGUUCGc -5'
5216 3' -57.7 NC_001798.1 + 126591 0.68 0.712177
Target:  5'- --aGAUCCCCGGGGC--CCGCA-GCu -3'
miRNA:   3'- augUUGGGGGCCCUGaaGGCGUuCGc -5'
5216 3' -57.7 NC_001798.1 + 125463 0.7 0.591099
Target:  5'- -cCGACgCCCGGGACcacggUCUGguGGCGc -3'
miRNA:   3'- auGUUGgGGGCCCUGa----AGGCguUCGC- -5'
5216 3' -57.7 NC_001798.1 + 125403 0.66 0.831856
Target:  5'- aGCAACCgCCGcGcGACggCCGagaaGAGCGg -3'
miRNA:   3'- aUGUUGGgGGC-C-CUGaaGGCg---UUCGC- -5'
5216 3' -57.7 NC_001798.1 + 124704 0.69 0.673171
Target:  5'- gACGugguCCaCCCGGGACgagccaaaccagccCCGCAGGCa -3'
miRNA:   3'- aUGUu---GG-GGGCCCUGaa------------GGCGUUCGc -5'
5216 3' -57.7 NC_001798.1 + 123907 0.67 0.80714
Target:  5'- cACGGCCCCCgaauccGGGGCgugcugugcccugggUCCGgGGGCc -3'
miRNA:   3'- aUGUUGGGGG------CCCUGa--------------AGGCgUUCGc -5'
5216 3' -57.7 NC_001798.1 + 123028 0.66 0.835152
Target:  5'- gGCAGCCCCUccacugccccacacaGGG---UCUGCGAGCa -3'
miRNA:   3'- aUGUUGGGGG---------------CCCugaAGGCGUUCGc -5'
5216 3' -57.7 NC_001798.1 + 122135 0.74 0.385701
Target:  5'- gGgGGCCCCCGGG----CCGCGGGCGa -3'
miRNA:   3'- aUgUUGGGGGCCCugaaGGCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 121993 0.68 0.731818
Target:  5'- cGCGGCCUCCggcgucgccucGGGGC-UCCGCcaGGGCGc -3'
miRNA:   3'- aUGUUGGGGG-----------CCCUGaAGGCG--UUCGC- -5'
5216 3' -57.7 NC_001798.1 + 117981 0.7 0.621478
Target:  5'- gUGCAguuuaagcGCCCgCCGGGGug-CCGCGAGCu -3'
miRNA:   3'- -AUGU--------UGGG-GGCCCUgaaGGCGUUCGc -5'
5216 3' -57.7 NC_001798.1 + 117663 0.71 0.570982
Target:  5'- cUGCAACCCgCgGGGACgcgCgGCcGGCGg -3'
miRNA:   3'- -AUGUUGGG-GgCCCUGaa-GgCGuUCGC- -5'
5216 3' -57.7 NC_001798.1 + 115796 0.69 0.651927
Target:  5'- gGCAaccuGCCCCUGGcGCUgugUCCGguGGCGu -3'
miRNA:   3'- aUGU----UGGGGGCCcUGA---AGGCguUCGC- -5'
5216 3' -57.7 NC_001798.1 + 113950 0.68 0.702251
Target:  5'- gGCGGCCCgUGGGuuguuagucGCgUCCGCcGGCGg -3'
miRNA:   3'- aUGUUGGGgGCCC---------UGaAGGCGuUCGC- -5'
5216 3' -57.7 NC_001798.1 + 112037 0.71 0.581022
Target:  5'- aGC-ACCCCCGGG-CUggUUCGCA-GCGa -3'
miRNA:   3'- aUGuUGGGGGCCCuGA--AGGCGUuCGC- -5'
5216 3' -57.7 NC_001798.1 + 110504 0.68 0.702251
Target:  5'- cAUcGCCCCCGGGuuuCUggCCGCGuccGCGc -3'
miRNA:   3'- aUGuUGGGGGCCCu--GAa-GGCGUu--CGC- -5'
5216 3' -57.7 NC_001798.1 + 108681 0.75 0.345879
Target:  5'- cGCcGCCCCCGGGGCcgcCCGCGGGg- -3'
miRNA:   3'- aUGuUGGGGGCCCUGaa-GGCGUUCgc -5'
5216 3' -57.7 NC_001798.1 + 106111 0.66 0.855842
Target:  5'- cGCGACCgCCGGG---UCUGCGguuccGGCGg -3'
miRNA:   3'- aUGUUGGgGGCCCugaAGGCGU-----UCGC- -5'
5216 3' -57.7 NC_001798.1 + 105992 0.67 0.797412
Target:  5'- cUACGACCCCUGGGGagggggggUCGCucucuGGUGg -3'
miRNA:   3'- -AUGUUGGGGGCCCUgaa-----GGCGu----UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.