miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5216 3' -57.7 NC_001798.1 + 73248 0.66 0.848037
Target:  5'- gGgGGCCCCCGGGGac-CUGgAGGCc -3'
miRNA:   3'- aUgUUGGGGGCCCUgaaGGCgUUCGc -5'
5216 3' -57.7 NC_001798.1 + 59745 0.66 0.848037
Target:  5'- -uCGGCCCCgGGGuGCcUCCGCuugguucccGGCGg -3'
miRNA:   3'- auGUUGGGGgCCC-UGaAGGCGu--------UCGC- -5'
5216 3' -57.7 NC_001798.1 + 59133 0.66 0.848037
Target:  5'- cGCgAACCCCCGaGcGAUggcacccaCGCAGGCGa -3'
miRNA:   3'- aUG-UUGGGGGC-C-CUGaag-----GCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 19810 0.66 0.848037
Target:  5'- gGC-ACCCguccucgcguuCUGGGGCUUCCGUugcGCGa -3'
miRNA:   3'- aUGuUGGG-----------GGCCCUGAAGGCGuu-CGC- -5'
5216 3' -57.7 NC_001798.1 + 2497 0.66 0.84004
Target:  5'- -uCAGCgCCgCGGGGCgcggcggCCGCGgcGGCGg -3'
miRNA:   3'- auGUUGgGG-GCCCUGaa-----GGCGU--UCGC- -5'
5216 3' -57.7 NC_001798.1 + 103374 0.66 0.84004
Target:  5'- aACGGCCCCCGaGGGuCguugaccaCgGCGAGCa -3'
miRNA:   3'- aUGUUGGGGGC-CCU-Gaa------GgCGUUCGc -5'
5216 3' -57.7 NC_001798.1 + 146438 0.66 0.84004
Target:  5'- gUGCGgaGCCCCCGGaGcccGCggCCGCAgccgAGCa -3'
miRNA:   3'- -AUGU--UGGGGGCC-C---UGaaGGCGU----UCGc -5'
5216 3' -57.7 NC_001798.1 + 26549 0.66 0.84004
Target:  5'- gGgGACCgCCgCGGGGCUggccacgCCGCcgAGGCGc -3'
miRNA:   3'- aUgUUGG-GG-GCCCUGAa------GGCG--UUCGC- -5'
5216 3' -57.7 NC_001798.1 + 492 0.66 0.843262
Target:  5'- cGCGccccGCCCCgGGGGCUUcccccgccccuccccCCGCGcccGCGg -3'
miRNA:   3'- aUGU----UGGGGgCCCUGAA---------------GGCGUu--CGC- -5'
5216 3' -57.7 NC_001798.1 + 70928 0.66 0.845658
Target:  5'- gACGACCCCCgaucGGGGCgcgguggucccgccgCCGCugcuGGCc -3'
miRNA:   3'- aUGUUGGGGG----CCCUGaa-------------GGCGu---UCGc -5'
5216 3' -57.7 NC_001798.1 + 46418 0.67 0.797412
Target:  5'- cACcGCCCCCccGGCggUCGCGAGCGc -3'
miRNA:   3'- aUGuUGGGGGccCUGaaGGCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 47248 0.67 0.797412
Target:  5'- gGCGGCCCCCGGccuuuGCUUCCucGCGgaAGuCGg -3'
miRNA:   3'- aUGUUGGGGGCCc----UGAAGG--CGU--UC-GC- -5'
5216 3' -57.7 NC_001798.1 + 105992 0.67 0.797412
Target:  5'- cUACGACCCCUGGGGagggggggUCGCucucuGGUGg -3'
miRNA:   3'- -AUGUUGGGGGCCCUgaa-----GGCGu----UCGC- -5'
5216 3' -57.7 NC_001798.1 + 94991 0.67 0.797412
Target:  5'- gGCGGCCgCCUGGGcc--CCGCAGGgCGg -3'
miRNA:   3'- aUGUUGG-GGGCCCugaaGGCGUUC-GC- -5'
5216 3' -57.7 NC_001798.1 + 5577 0.67 0.800971
Target:  5'- -cCGGCCCCaaaGGGGccggcgaggucgcccCguuggUCCGCGGGCGg -3'
miRNA:   3'- auGUUGGGGg--CCCU---------------Ga----AGGCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 10730 0.67 0.800971
Target:  5'- cGCGGcCCacaguaguuugugggCCCGGGuGCgUUCCGCGGGCGc -3'
miRNA:   3'- aUGUU-GG---------------GGGCCC-UG-AAGGCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 53029 0.67 0.806264
Target:  5'- aGCAACCcuauauCCCGGGACgcggcauaccUCCGaCcGGCGg -3'
miRNA:   3'- aUGUUGG------GGGCCCUGa---------AGGC-GuUCGC- -5'
5216 3' -57.7 NC_001798.1 + 90969 0.67 0.806264
Target:  5'- --gAACCCCUcgGGGGCauggUCCGCAccgccccacaGGCGc -3'
miRNA:   3'- augUUGGGGG--CCCUGa---AGGCGU----------UCGC- -5'
5216 3' -57.7 NC_001798.1 + 141543 0.67 0.806264
Target:  5'- gUACAcguACaCCCGGGugUUCgCGUucGCGg -3'
miRNA:   3'- -AUGU---UGgGGGCCCugAAG-GCGuuCGC- -5'
5216 3' -57.7 NC_001798.1 + 18596 0.67 0.797412
Target:  5'- aGCAGCCCCCccGGG---UCCGCGcGCc -3'
miRNA:   3'- aUGUUGGGGG--CCCugaAGGCGUuCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.