miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5216 3' -57.7 NC_001798.1 + 36760 0.7 0.591099
Target:  5'- aGCAACCCCUGGGGCUauaaaAGGCGc -3'
miRNA:   3'- aUGUUGGGGGCCCUGAaggcgUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 24703 0.7 0.591099
Target:  5'- cGCGcccccGCgCCCGGGGC--CCGCGGGCGc -3'
miRNA:   3'- aUGU-----UGgGGGCCCUGaaGGCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 125463 0.7 0.591099
Target:  5'- -cCGACgCCCGGGACcacggUCUGguGGCGc -3'
miRNA:   3'- auGUUGgGGGCCCUGa----AGGCguUCGC- -5'
5216 3' -57.7 NC_001798.1 + 135917 0.7 0.601205
Target:  5'- gACGACCCCCugccccaaacGGcCUUCCGCGgaGGCGc -3'
miRNA:   3'- aUGUUGGGGGc---------CCuGAAGGCGU--UCGC- -5'
5216 3' -57.7 NC_001798.1 + 152237 0.7 0.601205
Target:  5'- gGCGGCCgCUCGGGGCcggggUCCGCccggGAGCu -3'
miRNA:   3'- aUGUUGG-GGGCCCUGa----AGGCG----UUCGc -5'
5216 3' -57.7 NC_001798.1 + 47397 0.7 0.601205
Target:  5'- cGCGGCCCCCGuGGGuua-CGCAGGCc -3'
miRNA:   3'- aUGUUGGGGGC-CCUgaagGCGUUCGc -5'
5216 3' -57.7 NC_001798.1 + 15863 0.7 0.611334
Target:  5'- -uCGACCCCCucGGGGuCUgUCCGCAGGgCGc -3'
miRNA:   3'- auGUUGGGGG--CCCU-GA-AGGCGUUC-GC- -5'
5216 3' -57.7 NC_001798.1 + 117981 0.7 0.621478
Target:  5'- gUGCAguuuaagcGCCCgCCGGGGug-CCGCGAGCu -3'
miRNA:   3'- -AUGU--------UGGG-GGCCCUgaaGGCGUUCGc -5'
5216 3' -57.7 NC_001798.1 + 84215 0.7 0.621478
Target:  5'- cGCGcCCCCCGGGGCg-CCGUggGg- -3'
miRNA:   3'- aUGUuGGGGGCCCUGaaGGCGuuCgc -5'
5216 3' -57.7 NC_001798.1 + 154495 0.7 0.625538
Target:  5'- cGCcGCCCCuccccccgcgcgccgCGGGGCUgccuucCCGCGGGCGc -3'
miRNA:   3'- aUGuUGGGG---------------GCCCUGAa-----GGCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 157 0.7 0.625538
Target:  5'- cGCcGCCCCuccccccgcgcgccgCGGGGCUgccuucCCGCGGGCGc -3'
miRNA:   3'- aUGuUGGGG---------------GCCCUGAa-----GGCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 147235 0.7 0.631629
Target:  5'- cGCGggGgCCCCGGGGCcccgggCCGCGccGGCGg -3'
miRNA:   3'- aUGU--UgGGGGCCCUGaa----GGCGU--UCGC- -5'
5216 3' -57.7 NC_001798.1 + 85026 0.7 0.631629
Target:  5'- gGCGACguccgCCCCGGGGgUgCCGuCGAGCGc -3'
miRNA:   3'- aUGUUG-----GGGGCCCUgAaGGC-GUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 90671 0.69 0.649899
Target:  5'- aACGacGCCCCCGGcGACUcgcgcagggccgCCGcCAGGCGc -3'
miRNA:   3'- aUGU--UGGGGGCC-CUGAa-----------GGC-GUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 115796 0.69 0.651927
Target:  5'- gGCAaccuGCCCCUGGcGCUgugUCCGguGGCGu -3'
miRNA:   3'- aUGU----UGGGGGCCcUGA---AGGCguUCGC- -5'
5216 3' -57.7 NC_001798.1 + 82058 0.69 0.662056
Target:  5'- gACAccCCCCCGGGGCc-CCGCGgccGGCc -3'
miRNA:   3'- aUGUu-GGGGGCCCUGaaGGCGU---UCGc -5'
5216 3' -57.7 NC_001798.1 + 83879 0.69 0.662056
Target:  5'- gGCGACCCCCGgcccGGGCgcUCCGgaaGAGUGg -3'
miRNA:   3'- aUGUUGGGGGC----CCUGa-AGGCg--UUCGC- -5'
5216 3' -57.7 NC_001798.1 + 124704 0.69 0.673171
Target:  5'- gACGugguCCaCCCGGGACgagccaaaccagccCCGCAGGCa -3'
miRNA:   3'- aUGUu---GG-GGGCCCUGaa------------GGCGUUCGc -5'
5216 3' -57.7 NC_001798.1 + 77686 0.69 0.681229
Target:  5'- gGCGGCCCagcgcgcCCGGGGCagCaGCGAGCGc -3'
miRNA:   3'- aUGUUGGG-------GGCCCUGaaGgCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 43888 0.69 0.686254
Target:  5'- cGCGGCCCCgCGGGAgUacuggcUCUGCAacagaaccgagugauGGCGg -3'
miRNA:   3'- aUGUUGGGG-GCCCUgA------AGGCGU---------------UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.