miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5216 3' -57.7 NC_001798.1 + 125403 0.66 0.831856
Target:  5'- aGCAACCgCCGcGcGACggCCGagaaGAGCGg -3'
miRNA:   3'- aUGUUGGgGGC-C-CUGaaGGCg---UUCGC- -5'
5216 3' -57.7 NC_001798.1 + 129264 0.66 0.831856
Target:  5'- cUGCAACCgcaCCUGGuGACgUUCCucgGCAGGCa -3'
miRNA:   3'- -AUGUUGG---GGGCC-CUG-AAGG---CGUUCGc -5'
5216 3' -57.7 NC_001798.1 + 147012 0.66 0.831856
Target:  5'- gGgGACCCCCGGGcgggccgggGCUuggCCGCcgAGGUGc -3'
miRNA:   3'- aUgUUGGGGGCCC---------UGAa--GGCG--UUCGC- -5'
5216 3' -57.7 NC_001798.1 + 58765 0.66 0.823494
Target:  5'- gACAACCCCCaGGGugccgacaaACaggggCCGCGGGgCGa -3'
miRNA:   3'- aUGUUGGGGG-CCC---------UGaa---GGCGUUC-GC- -5'
5216 3' -57.7 NC_001798.1 + 75519 0.66 0.823494
Target:  5'- aACGGCCgUCgGGGACUUCCu--GGCGu -3'
miRNA:   3'- aUGUUGG-GGgCCCUGAAGGcguUCGC- -5'
5216 3' -57.7 NC_001798.1 + 1351 0.66 0.823494
Target:  5'- cGCAGCuCCgCCGGG-CcgCCGCGcacGGCGu -3'
miRNA:   3'- aUGUUG-GG-GGCCCuGaaGGCGU---UCGC- -5'
5216 3' -57.7 NC_001798.1 + 146628 0.66 0.823494
Target:  5'- cGCAuuagGCCCCCGcGGGCaUCCGgcGGCc -3'
miRNA:   3'- aUGU----UGGGGGC-CCUGaAGGCguUCGc -5'
5216 3' -57.7 NC_001798.1 + 32030 0.66 0.814961
Target:  5'- gGCGACCgcggCCaCGGGccGCUcgccccggcgUCCGCGGGCGc -3'
miRNA:   3'- aUGUUGG----GG-GCCC--UGA----------AGGCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 153168 0.66 0.814961
Target:  5'- --gGAgCUCCGGGGC-UCCGCcGGCc -3'
miRNA:   3'- augUUgGGGGCCCUGaAGGCGuUCGc -5'
5216 3' -57.7 NC_001798.1 + 89463 0.66 0.814961
Target:  5'- aACcGCCCCUGGGugUcCgGCAGGa- -3'
miRNA:   3'- aUGuUGGGGGCCCugAaGgCGUUCgc -5'
5216 3' -57.7 NC_001798.1 + 123907 0.67 0.80714
Target:  5'- cACGGCCCCCgaauccGGGGCgugcugugcccugggUCCGgGGGCc -3'
miRNA:   3'- aUGUUGGGGG------CCCUGa--------------AGGCgUUCGc -5'
5216 3' -57.7 NC_001798.1 + 141543 0.67 0.806264
Target:  5'- gUACAcguACaCCCGGGugUUCgCGUucGCGg -3'
miRNA:   3'- -AUGU---UGgGGGCCCugAAG-GCGuuCGC- -5'
5216 3' -57.7 NC_001798.1 + 90969 0.67 0.806264
Target:  5'- --gAACCCCUcgGGGGCauggUCCGCAccgccccacaGGCGc -3'
miRNA:   3'- augUUGGGGG--CCCUGa---AGGCGU----------UCGC- -5'
5216 3' -57.7 NC_001798.1 + 53029 0.67 0.806264
Target:  5'- aGCAACCcuauauCCCGGGACgcggcauaccUCCGaCcGGCGg -3'
miRNA:   3'- aUGUUGG------GGGCCCUGa---------AGGC-GuUCGC- -5'
5216 3' -57.7 NC_001798.1 + 10730 0.67 0.800971
Target:  5'- cGCGGcCCacaguaguuugugggCCCGGGuGCgUUCCGCGGGCGc -3'
miRNA:   3'- aUGUU-GG---------------GGGCCC-UG-AAGGCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 5577 0.67 0.800971
Target:  5'- -cCGGCCCCaaaGGGGccggcgaggucgcccCguuggUCCGCGGGCGg -3'
miRNA:   3'- auGUUGGGGg--CCCU---------------Ga----AGGCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 46418 0.67 0.797412
Target:  5'- cACcGCCCCCccGGCggUCGCGAGCGc -3'
miRNA:   3'- aUGuUGGGGGccCUGaaGGCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 47248 0.67 0.797412
Target:  5'- gGCGGCCCCCGGccuuuGCUUCCucGCGgaAGuCGg -3'
miRNA:   3'- aUGUUGGGGGCCc----UGAAGG--CGU--UC-GC- -5'
5216 3' -57.7 NC_001798.1 + 105992 0.67 0.797412
Target:  5'- cUACGACCCCUGGGGagggggggUCGCucucuGGUGg -3'
miRNA:   3'- -AUGUUGGGGGCCCUgaa-----GGCGu----UCGC- -5'
5216 3' -57.7 NC_001798.1 + 18596 0.67 0.797412
Target:  5'- aGCAGCCCCCccGGG---UCCGCGcGCc -3'
miRNA:   3'- aUGUUGGGGG--CCCugaAGGCGUuCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.