miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5216 3' -57.7 NC_001798.1 + 77821 0.99 0.008868
Target:  5'- cUACAACCCCCGGGACUUCCGCAAcGCGc -3'
miRNA:   3'- -AUGUUGGGGGCCCUGAAGGCGUU-CGC- -5'
5216 3' -57.7 NC_001798.1 + 4137 0.79 0.201471
Target:  5'- cGCcGCCCCCGGGGCccUCGCGGGCa -3'
miRNA:   3'- aUGuUGGGGGCCCUGaaGGCGUUCGc -5'
5216 3' -57.7 NC_001798.1 + 2549 0.76 0.288491
Target:  5'- cGCGGCCCCCgcgggaGGGGCggCCGCGGGgCGg -3'
miRNA:   3'- aUGUUGGGGG------CCCUGaaGGCGUUC-GC- -5'
5216 3' -57.7 NC_001798.1 + 104344 0.76 0.313345
Target:  5'- gACGGCUCCCGGGAUcagcaugcccagCUGCAGGCGg -3'
miRNA:   3'- aUGUUGGGGGCCCUGaa----------GGCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 88976 0.75 0.337523
Target:  5'- gACGGCCUCCucgggggugcucuGGGGgaUCCGCGAGCGg -3'
miRNA:   3'- aUGUUGGGGG-------------CCCUgaAGGCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 31634 0.75 0.338277
Target:  5'- cGCcGCCCCCGuGGugU-CUGCGAGCGc -3'
miRNA:   3'- aUGuUGGGGGC-CCugAaGGCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 108681 0.75 0.345879
Target:  5'- cGCcGCCCCCGGGGCcgcCCGCGGGg- -3'
miRNA:   3'- aUGuUGGGGGCCCUGaa-GGCGUUCgc -5'
5216 3' -57.7 NC_001798.1 + 48359 0.75 0.361448
Target:  5'- cGCGGCCgCCCGGGGCcgccCCGCGGGgCGu -3'
miRNA:   3'- aUGUUGG-GGGCCCUGaa--GGCGUUC-GC- -5'
5216 3' -57.7 NC_001798.1 + 122135 0.74 0.385701
Target:  5'- gGgGGCCCCCGGG----CCGCGGGCGa -3'
miRNA:   3'- aUgUUGGGGGCCCugaaGGCGUUCGC- -5'
5216 3' -57.7 NC_001798.1 + 60920 0.73 0.43642
Target:  5'- cGCGacGCUCCCGGGACaaUCCGCAgagacgaGGCGc -3'
miRNA:   3'- aUGU--UGGGGGCCCUGa-AGGCGU-------UCGC- -5'
5216 3' -57.7 NC_001798.1 + 27268 0.72 0.486984
Target:  5'- cGCAGCCCCgUggcgcgcgggggggaGGGGCUgCCGCGAGCu -3'
miRNA:   3'- aUGUUGGGG-G---------------CCCUGAaGGCGUUCGc -5'
5216 3' -57.7 NC_001798.1 + 134155 0.72 0.49267
Target:  5'- -uCGGCCCCCGGGGCcgUCGC-GGCc -3'
miRNA:   3'- auGUUGGGGGCCCUGaaGGCGuUCGc -5'
5216 3' -57.7 NC_001798.1 + 27213 0.72 0.49267
Target:  5'- --aAGCCCCCGGGGCggggCGCGGGgGa -3'
miRNA:   3'- augUUGGGGGCCCUGaag-GCGUUCgC- -5'
5216 3' -57.7 NC_001798.1 + 51431 0.71 0.531305
Target:  5'- gACGGCCCCgGGGcgcggcCUUCCGCGA-CGg -3'
miRNA:   3'- aUGUUGGGGgCCCu-----GAAGGCGUUcGC- -5'
5216 3' -57.7 NC_001798.1 + 135488 0.71 0.551034
Target:  5'- --gGACCCCgGGGACgcggacgCCGCGcacGGCGc -3'
miRNA:   3'- augUUGGGGgCCCUGaa-----GGCGU---UCGC- -5'
5216 3' -57.7 NC_001798.1 + 23827 0.71 0.560984
Target:  5'- ---cGCCCCCGGGGCgcgugCUGUAcGGCGg -3'
miRNA:   3'- auguUGGGGGCCCUGaa---GGCGU-UCGC- -5'
5216 3' -57.7 NC_001798.1 + 117663 0.71 0.570982
Target:  5'- cUGCAACCCgCgGGGACgcgCgGCcGGCGg -3'
miRNA:   3'- -AUGUUGGG-GgCCCUGaa-GgCGuUCGC- -5'
5216 3' -57.7 NC_001798.1 + 23629 0.71 0.570982
Target:  5'- --gGACCCCCGcGGCgaCCGCGGGCc -3'
miRNA:   3'- augUUGGGGGCcCUGaaGGCGUUCGc -5'
5216 3' -57.7 NC_001798.1 + 112037 0.71 0.581022
Target:  5'- aGC-ACCCCCGGG-CUggUUCGCA-GCGa -3'
miRNA:   3'- aUGuUGGGGGCCCuGA--AGGCGUuCGC- -5'
5216 3' -57.7 NC_001798.1 + 36760 0.7 0.591099
Target:  5'- aGCAACCCCUGGGGCUauaaaAGGCGc -3'
miRNA:   3'- aUGUUGGGGGCCCUGAaggcgUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.