miRNA display CGI


Results 61 - 80 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5216 5' -62.5 NC_001798.1 + 67158 0.66 0.643669
Target:  5'- gGGCGCagcacUCGUGGCCccauggaaagggggGAgGagGGGGCGGg -3'
miRNA:   3'- -CCGCG-----AGCGCCGG--------------UUgCggCUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 101826 0.66 0.640771
Target:  5'- gGGUaaGCUCGCGGCgGGgggaggcguggguccCGgCGGcGGCGGa -3'
miRNA:   3'- -CCG--CGAGCGCCGgUU---------------GCgGCU-CCGCC- -5'
5216 5' -62.5 NC_001798.1 + 55737 0.66 0.640771
Target:  5'- aGGUGCUUgGCGGCCgcacgggggauaaggGugGCCGGcGCGc -3'
miRNA:   3'- -CCGCGAG-CGCCGG---------------UugCGGCUcCGCc -5'
5216 5' -62.5 NC_001798.1 + 10387 0.66 0.636907
Target:  5'- cGGgGgUCGgGGUCGGCaCaGGGGCGGg -3'
miRNA:   3'- -CCgCgAGCgCCGGUUGcGgCUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 115012 0.66 0.636907
Target:  5'- cGGCGCUgGUgauGGgCAAgGCCGu-GCGGa -3'
miRNA:   3'- -CCGCGAgCG---CCgGUUgCGGCucCGCC- -5'
5216 5' -62.5 NC_001798.1 + 64342 0.66 0.636907
Target:  5'- uGCGUggacgagaagGCGGaCCAGgGUgGAGGCGGg -3'
miRNA:   3'- cCGCGag--------CGCC-GGUUgCGgCUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 149457 0.66 0.636907
Target:  5'- gGGUGCg-GCGGCUccACGCgGGGGCc- -3'
miRNA:   3'- -CCGCGagCGCCGGu-UGCGgCUCCGcc -5'
5216 5' -62.5 NC_001798.1 + 87756 0.66 0.636907
Target:  5'- cGGCccugaGCcgCGCGGCCAcguCGuCCGGGG-GGu -3'
miRNA:   3'- -CCG-----CGa-GCGCCGGUu--GC-GGCUCCgCC- -5'
5216 5' -62.5 NC_001798.1 + 91003 0.67 0.627243
Target:  5'- aGGCGCaagcgaCGCGGCCAGaagcccuCCGGGcccacGCGGa -3'
miRNA:   3'- -CCGCGa-----GCGCCGGUUgc-----GGCUC-----CGCC- -5'
5216 5' -62.5 NC_001798.1 + 27962 0.67 0.627243
Target:  5'- cGGCGCUC-CaGCCGugccGCGCCccGGCGc -3'
miRNA:   3'- -CCGCGAGcGcCGGU----UGCGGcuCCGCc -5'
5216 5' -62.5 NC_001798.1 + 67616 0.67 0.627243
Target:  5'- cGCGCUC-CGGCgAGgGCgGAuGCGGc -3'
miRNA:   3'- cCGCGAGcGCCGgUUgCGgCUcCGCC- -5'
5216 5' -62.5 NC_001798.1 + 69566 0.67 0.627243
Target:  5'- cGGCaCUCuCGGCCcACGCCaucGGGGCu- -3'
miRNA:   3'- -CCGcGAGcGCCGGuUGCGG---CUCCGcc -5'
5216 5' -62.5 NC_001798.1 + 97693 0.67 0.627243
Target:  5'- aGCGgUCGCuGGCCAGCcUCG-GGCGc -3'
miRNA:   3'- cCGCgAGCG-CCGGUUGcGGCuCCGCc -5'
5216 5' -62.5 NC_001798.1 + 147157 0.67 0.627243
Target:  5'- cGGgGgUCcCGGguagccgcCCGGCGCCG-GGCGGa -3'
miRNA:   3'- -CCgCgAGcGCC--------GGUUGCGGCuCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 149730 0.67 0.627243
Target:  5'- cGGCcCcCGCGGCgcagCAGCGCgGGGGCcgaGGg -3'
miRNA:   3'- -CCGcGaGCGCCG----GUUGCGgCUCCG---CC- -5'
5216 5' -62.5 NC_001798.1 + 149945 0.67 0.627243
Target:  5'- cGGCGaC-CGCGGCCugggacgacggaGACGCCGA--CGGn -3'
miRNA:   3'- -CCGC-GaGCGCCGG------------UUGCGGCUccGCC- -5'
5216 5' -62.5 NC_001798.1 + 153939 0.67 0.627243
Target:  5'- uGGgGCaccaGCaGCCAGCGCCGcAGGagcgaGGa -3'
miRNA:   3'- -CCgCGag--CGcCGGUUGCGGC-UCCg----CC- -5'
5216 5' -62.5 NC_001798.1 + 147467 0.67 0.627243
Target:  5'- cGCGCcgCGUGaGCCGucCGCCGGGGgacccaggcucCGGg -3'
miRNA:   3'- cCGCGa-GCGC-CGGUu-GCGGCUCC-----------GCC- -5'
5216 5' -62.5 NC_001798.1 + 97277 0.67 0.626277
Target:  5'- cGCGUUCgGgGGCCAccuggcgGCGCUGGacauGGUGGa -3'
miRNA:   3'- cCGCGAG-CgCCGGU-------UGCGGCU----CCGCC- -5'
5216 5' -62.5 NC_001798.1 + 35583 0.67 0.626277
Target:  5'- cGGCGCUgcucggcUGCGGCCGcggGCuCCGGGGg-- -3'
miRNA:   3'- -CCGCGA-------GCGCCGGU---UGcGGCUCCgcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.