miRNA display CGI


Results 41 - 60 of 386 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5216 5' -62.5 NC_001798.1 + 24822 0.66 0.656216
Target:  5'- uGCGCggggaccugcgCGUGGCCGGCGgcagCGAGGCc- -3'
miRNA:   3'- cCGCGa----------GCGCCGGUUGCg---GCUCCGcc -5'
5216 5' -62.5 NC_001798.1 + 27520 0.66 0.656216
Target:  5'- gGGCGCcCGCGGgaaggcagccCCGcgGCGCgCGGGG-GGa -3'
miRNA:   3'- -CCGCGaGCGCC----------GGU--UGCG-GCUCCgCC- -5'
5216 5' -62.5 NC_001798.1 + 79276 0.66 0.656216
Target:  5'- cGGCgGC-CGCGGaCCuGGCcCCGuGGGCGGu -3'
miRNA:   3'- -CCG-CGaGCGCC-GG-UUGcGGC-UCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 97192 0.66 0.656216
Target:  5'- uGGCGCagCGCGaGCUgcagcaggaGAcCGCCGcGGUGGc -3'
miRNA:   3'- -CCGCGa-GCGC-CGG---------UU-GCGGCuCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 147985 0.66 0.646566
Target:  5'- aGGCGCgugCcCGGCCAcaGCCGuGGGUGu -3'
miRNA:   3'- -CCGCGa--GcGCCGGUugCGGC-UCCGCc -5'
5216 5' -62.5 NC_001798.1 + 119374 0.66 0.646566
Target:  5'- aGGCGCuggUCGCcuGGCUGGCGCaCGcGGGCc- -3'
miRNA:   3'- -CCGCG---AGCG--CCGGUUGCG-GC-UCCGcc -5'
5216 5' -62.5 NC_001798.1 + 119115 0.66 0.646566
Target:  5'- -uCGCUCGUGGCCGACGUCca-GCa- -3'
miRNA:   3'- ccGCGAGCGCCGGUUGCGGcucCGcc -5'
5216 5' -62.5 NC_001798.1 + 107433 0.66 0.646566
Target:  5'- gGGuCGC-CGCGGCgaccccgcgcccCGACcCCGAGGaCGGc -3'
miRNA:   3'- -CC-GCGaGCGCCG------------GUUGcGGCUCC-GCC- -5'
5216 5' -62.5 NC_001798.1 + 3481 0.66 0.646566
Target:  5'- cGCGCggucguagCgGCGGCuCAugGCCacGGCGGc -3'
miRNA:   3'- cCGCGa-------G-CGCCG-GUugCGGcuCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 79359 0.66 0.646566
Target:  5'- aGCGCguaCGCcagGGCCGGCGgccagaCGGGcGCGGg -3'
miRNA:   3'- cCGCGa--GCG---CCGGUUGCg-----GCUC-CGCC- -5'
5216 5' -62.5 NC_001798.1 + 18205 0.66 0.646566
Target:  5'- aGGCGC--GCaGCCu-CGCCGggggacgguGGGCGGg -3'
miRNA:   3'- -CCGCGagCGcCGGuuGCGGC---------UCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 23935 0.66 0.646566
Target:  5'- cGGCGCcCGU-GUgGGCGCCGAGcUGGg -3'
miRNA:   3'- -CCGCGaGCGcCGgUUGCGGCUCcGCC- -5'
5216 5' -62.5 NC_001798.1 + 148279 0.66 0.646566
Target:  5'- gGGCGggCGUGGCgGGCaggugugcgGgCGGGGUGGg -3'
miRNA:   3'- -CCGCgaGCGCCGgUUG---------CgGCUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 43856 0.66 0.646566
Target:  5'- cGGCGCUCcacauacaGCGGaaacCCAGCGgCCGcGGCc- -3'
miRNA:   3'- -CCGCGAG--------CGCC----GGUUGC-GGCuCCGcc -5'
5216 5' -62.5 NC_001798.1 + 43513 0.66 0.646566
Target:  5'- cGCGCgcagguaggCgGCGGCCGcgucuccCGCCaGGGCGGu -3'
miRNA:   3'- cCGCGa--------G-CGCCGGUu------GCGGcUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 43166 0.66 0.646566
Target:  5'- cGCGCcgcCGCGGCaAACGCCu-GGCcGGu -3'
miRNA:   3'- cCGCGa--GCGCCGgUUGCGGcuCCG-CC- -5'
5216 5' -62.5 NC_001798.1 + 36257 0.66 0.646566
Target:  5'- cGCGCUCcUGuGUgGACcCCGGGGUGGg -3'
miRNA:   3'- cCGCGAGcGC-CGgUUGcGGCUCCGCC- -5'
5216 5' -62.5 NC_001798.1 + 24294 0.66 0.646566
Target:  5'- uGGCGCgcgagaaCGCGGCgc-UGaCCGGGGCGc -3'
miRNA:   3'- -CCGCGa------GCGCCGguuGC-GGCUCCGCc -5'
5216 5' -62.5 NC_001798.1 + 2395 0.66 0.645601
Target:  5'- aGGC-CUCcagggcgGCGGCCGaggGCGCCGGcguguGGCuGGg -3'
miRNA:   3'- -CCGcGAG-------CGCCGGU---UGCGGCU-----CCG-CC- -5'
5216 5' -62.5 NC_001798.1 + 103143 0.66 0.643669
Target:  5'- aGGCGC-CGCccgauggcgcacagGGCCAcguGCGCaaacaGGGuGCGGu -3'
miRNA:   3'- -CCGCGaGCG--------------CCGGU---UGCGg----CUC-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.